section	item	value	evidence
inversion	Hass_vs_West	Pa12:192821-19060681 vs Hass12:149893-19101302; ref span 18867861 bp; query span 18951410 bp	SyRI INV534
inversion_count	Hass_vs_West	2	All chr12 INV parent records
inversion	Hass_vs_Anise	Hass12:140236-18627181 vs Chr12:1-19317231; ref span 18486946 bp; query span 19317231 bp	SyRI INV502
inversion_count	Hass_vs_Anise	4	All chr12 INV parent records
inversion	Anise_vs_West	Pa12:1300101-1507665 vs Chr12:465509-762860; ref span 207565 bp; query span 297352 bp	SyRI INV577
inversion_count	Anise_vs_West	4	All chr12 INV parent records
genes	overlapping genes	380	GFF + original interval tables
genes	annotated genes	267	GFF + original interval tables
genes	TE-like excluded	42	GFF + original interval tables
genes	retained non-TE-like	225	GFF + original interval tables
genes	MVD annotated	13	GFF + original interval tables
genes	MVD cluster	11	GFF + original interval tables
four_MVD_orthogroups	Hass	14	OG0000693,OG0002267,OG0003832,OG0026830
four_MVD_orthogroups	Anise	5	OG0000693,OG0002267,OG0003832,OG0026830
four_MVD_orthogroups	West_Indian_T2T	1	OG0000693,OG0002267,OG0003832,OG0026830
ANC12	CAR0011	"{""n"": 141, ""r"": -0.8837228895440356, ""median"": 41224524.0, ""inside"": 7}"	164 bridge anchor rows; rank and GFF checked
ANC12	CAR0025	"{""n"": 20, ""r"": 0.9913566700657104, ""median"": 11980400.5, ""inside"": 20}"	164 bridge anchor rows; rank and GFF checked
ANC12	CAR0031	"{""n"": 3, ""r"": 0.9934499646599974, ""median"": 16887931.0, ""inside"": 3}"	164 bridge anchor rows; rank and GFF checked
enrichment	ec:4.1.1.33	"{""annotation_type"": ""EC"", ""term"": ""ec:4.1.1.33"", ""target_with_term"": ""13"", ""target_total"": ""225"", ""background_with_term"": ""1"", ""background_total"": ""13552"", ""target_percent"": ""5.77778"", ""background_percent"": ""0.00737898"", ""odds_ratio"": ""573.946"", ""pvalue"": ""5.73152e-23"", ""fdr_bh"": ""1.37557e-21""}"	Original limited-background contingency tables; Fisher/BH recalculated
enrichment	K01597	"{""annotation_type"": ""KEGG_KO"", ""term"": ""K01597"", ""target_with_term"": ""13"", ""target_total"": ""225"", ""background_with_term"": ""1"", ""background_total"": ""13552"", ""target_percent"": ""5.77778"", ""background_percent"": ""0.00737898"", ""odds_ratio"": ""573.946"", ""pvalue"": ""5.73152e-23"", ""fdr_bh"": ""1.37557e-21""}"	Original limited-background contingency tables; Fisher/BH recalculated
enrichment	00900	"{""annotation_type"": ""KEGG_Pathway"", ""term"": ""00900"", ""target_with_term"": ""13"", ""target_total"": ""225"", ""background_with_term"": ""71"", ""background_total"": ""13552"", ""target_percent"": ""5.77778"", ""background_percent"": ""0.523908"", ""odds_ratio"": ""11.9786"", ""pvalue"": ""9.3498e-10"", ""fdr_bh"": ""4.11391e-08""}"	Original limited-background contingency tables; Fisher/BH recalculated