COMPARATIVE GENOMICS · PRECOMPUTED RESULTS
Avocado synteny explorer
Compare chromosome-scale conservation and structural change among Hass, West Indian T2T, and Anise. Select a genome pair, inspect the published analysis outputs, then move from the whole genome to conserved single-copy genes.
Result browserFast, reproducible visualization of existing SyRI and OrthoFinder results—no new whole-genome alignment is run.
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WHOLE-GENOME VIEW
Hass × West Indian T2T
CONSERVED GENE LOOKUP
Find a single-copy ortholog across all three genomes
This lookup uses 17,730 coordinate-resolved one-to-one OrthoFinder anchors. It reports ortholog-group membership separately from structural-synteny blocks.
Chromosome plots and structural counts come from the completed SyRI/plotsr workflow. Dot plots and gene lookup use one-to-one OrthoFinder groups with available genome coordinates; they show conserved ortholog order and are not a substitute for base-level alignment.
