Persea americana — Anise

Anise avocado genome

Explore the chromosome-scale Anise assembly, structural annotation, exact feature sequences, published biological records, and integrated analysis tools.

12 + 295
chromosomes · scaffolds
50,469
genes
870.5 Mb
assembly
Collection profile

About the Anise genome accession

Anise is the accession label supplied with this avocado genome dataset and is presented here as a distinct PerseaDB collection. The deposited source package establishes a chromosome-scale genome and comprehensive structural annotation, but it does not include a verified horticultural passport describing geographic origin, racial ancestry, flowering behavior, or fruit phenotype. Those traits are therefore intentionally left unassigned until citable accession metadata is available.

Database identity
Persea americana — Anise
Collection status
Independent genome accession
Horticultural classification
Not supplied with source files
Verified resource
Genome, annotation, transcripts and proteins

The name “Anise” alone is not evidence that this accession belongs to the Mexican horticultural group; verified specimen or project metadata is required before adding biological trait claims.

Assembly metrics

Genome statistics and provenance

Sequence totals, GC content, and N50 values describe the exact assembly represented in this PerseaDB collection. Missing source metadata are shown explicitly rather than inferred.

Assembly size
870,507,341 bp
Chromosomes
12
Assembly sequences
307 (12 chromosomes + 295 scaffolds)
Scaffold N50
79,617,558 bp
Contig N50
40,813,929 bp
GC content
39.65%
Repeat sequence
66.212%
Sequencing and scaffolding
PacBio HiFi; Hi-C (Illumina NovaSeq 6000 PE150)
Genome publication

No cultivar-specific publication was supplied with the Anise source package.

DOI: Not supplied
External resources

Continue in public genome databases

Exact cultivar accessions are used where verified; otherwise links open species-level resources and do not imply that this assembly has been deposited there.

Genome collection

Persea americana — Anise

The Anise collection contains 12 chromosomes and 295 unplaced scaffolds totaling 870,507,341 bp, with complete sequences and verified relationships for every published gene model.

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Organism & assembly

Anise chromosome-scale genome assembly

Persea americana

Abbreviation
Anise
Genus
Persea
Species
americana-Anise
Common name
avocado
Organism ID
7
Assembly
12 chromosomes + 295 unplaced scaffolds
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Structural annotation

Avocado_Anise_annotation

Analysis ID 5 · GFF3_import v1.0

Genes
50,469 genes · 340,037,628 bp
mRNAs
50,469 mRNAs · 92,183,957 nt
CDS
50,469 CDS · 81,862,158 nt
Proteins
50,469 proteins · 27,287,386 aa
Relationships
Gene → mRNA → CDS / Protein
Functional discovery

Search genes by annotation

Use biological phrases such as fatty acid, lipid metabolism, kinase, or transcription factor in addition to record identifiers.

Search annotations
Gene-set analysis

GO enrichment

Submit a collection-specific gene list and calculate over-represented Gene Ontology terms against the available annotation background.

Open GO enrichment
PCR assay design

Primer3

Paste a genomic target sequence and design candidate PCR primer pairs using the locally installed Primer3 engine.

Design primers
Identifier pathway

Move from a gene to its transcript and protein

scaffold1.g00001 → scaffold1.g00001.m1 → scaffold1.g00001.m1.cds / scaffold1.g00001.m1-protein

Gene recordsTranscript sequencesProtein products
Sequence analysis

Compare nucleotide or protein sequences against this genome collection

Open BLAST