Feature identity
- Identifier
- PaHa03g10080.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,065 bp
- Genomic location
- 3:20,049,693–20,051,282
- Strand
- −
Hass · mRNA
PaHa03g10080.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,065
- bp
- 3:20,049,693–20,051,282
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g10080
- eggNOG
- Preferred name: HMGB13 | Seed ortholog: 337451.A0A3S3N1A8 | COG: S | eggNOG OG: HMG_box@131567|Aj-7, HMG_box@2759|Of-14
- Gene Ontology
- GO:0000793 condensed chromosome; GO:0000794 condensed nuclear chromosome; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0008150 biological_process
- KEGG
- EC: ec:2.1.1.354 | KO: K09273 | Pathway: 00310, 01100 | BRITE: 00001, 03000, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g10080.1-protein
derives_frommRNAPaHa03g10080.1
mRNAPaHa03g10080.1
part_ofgenePaHa03g10080
CDS
part_ofPaHa03g10080.1-CDS-3-1787993825:20049693..20050016mRNAPaHa03g10080.1
CDS
part_ofPaHa03g10080.1-CDS-3-1787993825:20050109..20050345mRNAPaHa03g10080.1
CDS
part_ofPaHa03g10080.1-CDS-3-1787993825:20050442..20050543mRNAPaHa03g10080.1
CDS
part_ofPaHa03g10080.1-CDS-3-1787993825:20050881..20051282mRNAPaHa03g10080.1
exon
part_ofPaHa03g10080.1-exon-3-1787993825:20049693..20050016mRNAPaHa03g10080.1
exon
part_ofPaHa03g10080.1-exon-3-1787993825:20050109..20050345mRNAPaHa03g10080.1
exon
part_ofPaHa03g10080.1-exon-3-1787993825:20050442..20050543mRNAPaHa03g10080.1
exon
part_ofPaHa03g10080.1-exon-3-1787993825:20050881..20051282mRNAPaHa03g10080.1
