Feature identity
- Identifier
- PaHa03g12080.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,356 bp
- Genomic location
- 3:25,693,409–25,754,680
- Strand
- +
Hass · mRNA
PaHa03g12080.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,356
- bp
- 3:25,693,409–25,754,680
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g12080
- eggNOG
- Preferred name: TFB2 | Seed ortholog: 337451.A0A3S3Q018 | COG: S | eggNOG OG: Tfb2@131567|A-1, Tfb2_C@2759|A-1
- Gene Ontology
- GO:0001111 RNA polymerase II promoter clearance; GO:0001113 transcription open complex formation at RNA polymerase II promoter; GO:0001671 ATPase activator activity; GO:0003690 double-stranded DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006281 DNA repair; GO:0006289 nucleotide-excision repair; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0010224 response to UV-B; GO:0016251 RNA polymerase II general transcription initiation factor activity
- KEGG
- KO: K03144 | Pathway: 03022, 03420 | BRITE: 00001, 03021, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g12080.1-protein
derives_frommRNAPaHa03g12080.1
mRNAPaHa03g12080.1
part_ofgenePaHa03g12080
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25693409..25693521mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25709332..25709499mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25716046..25716114mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25727498..25727591mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25728057..25728157mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25728691..25728736mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25728815..25728874mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25729560..25729628mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25729732..25729815mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25729909..25729992mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25738893..25738978mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25739085..25739175mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25750692..25750772mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25754371..25754445mRNAPaHa03g12080.1
CDS
part_ofPaHa03g12080.1-CDS-3-1787993825:25754546..25754680mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25693409..25693521mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25709332..25709499mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25716046..25716114mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25727498..25727591mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25728057..25728157mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25728691..25728736mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25728815..25728874mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25729560..25729628mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25729732..25729815mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25729909..25729992mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25738893..25738978mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25739085..25739175mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25750692..25750772mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25754371..25754445mRNAPaHa03g12080.1
exon
part_ofPaHa03g12080.1-exon-3-1787993825:25754546..25754680mRNAPaHa03g12080.1
