PaHa01g09900.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

993: bp
1:14,571,741–14,583,411: genomic location

Record overview

Feature identity

Identifier: PaHa01g09900.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 993 bp
Genomic location: 1:14,571,741–14,583,411
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa01g09900

eggNOG: Preferred name: BnaA02g34810D | Seed ortholog: 337451.A0A3S3MMR9 | COG: S | eggNOG OG: WD40@131567|Pb-13, WD40@2759|BjC-21, WD40@35493|PMa-31
Gene Ontology: GO:0000723 telomere maintenance; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0001111 RNA polymerase II promoter clearance; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0006338 chromatin remodeling; GO:0007507 heart development; GO:0008150 biological_process; GO:0010467 gene expression; GO:0012501 programmed cell death; GO:0030587 sorocarp development; GO:0030846 termination of RNA polymerase II transcription, poly(A)-coupled; GO:0031124 mRNA 3'-end processing; GO:0031126 sno(s)RNA 3'-end processing; GO:0031509 subtelomeric heterochromatin formation; GO:0032785 negative regulation of DNA-templated transcription, elongation; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0035097 histone methyltransferase complex; GO:0042800 histone H3K4 methyltransferase activity; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0048188 Set1C/COMPASS complex; GO:0071027 nuclear RNA surveillance; GO:0072357 PTW/PP1 phosphatase complex; GO:0090052 regulation of pericentric heterochromatin formation; GO:0106222 lncRNA binding; GO:0110064 lncRNA catabolic process; GO:0140744 negative regulation of lncRNA transcription; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway; GO:1902801 regulation of siRNA-independent facultative heterochromatin formation; GO:1990567 DPS complex
KEGG: KO: K14962 | Pathway: 03015 | BRITE: 00001, 03019, 03036

Biological context