Feature identity
- Identifier
- PaHa03g17410.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,166 bp
- Genomic location
- 3:55,170,093–55,173,527
- Strand
- −
Hass · mRNA
PaHa03g17410.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,166
- bp
- 3:55,170,093–55,173,527
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g17410
- eggNOG
- Preferred name: ZSWIM3 | Seed ortholog: 337451.A0A443NCY9 | COG: COG4715 | eggNOG OG: SWIM@131567|Z-5
- Gene Ontology
- GO:0003674 molecular_function; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0008150 biological_process; GO:0009506 plasmodesma; GO:0009639 response to red or far red light; GO:0010017 red or far-red light signaling pathway; GO:0010018 far-red light signaling pathway; GO:0010218 response to far red light; GO:0042753 positive regulation of circadian rhythm; GO:0045893 positive regulation of DNA-templated transcription; GO:1900056 negative regulation of leaf senescence
- KEGG
- EC: ec:3.4.16.5 | KO: K13289, K17604, K26145 | Pathway: 04142 | BRITE: 00001, 01000, 01002, 01009, 03110, 04131, 04147, 04990
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g17410.1-protein
derives_frommRNAPaHa03g17410.1
mRNAPaHa03g17410.1
part_ofgenePaHa03g17410
CDS
part_ofPaHa03g17410.1-CDS-3-1787993825:55170093..55170889mRNAPaHa03g17410.1
CDS
part_ofPaHa03g17410.1-CDS-3-1787993825:55171432..55171676mRNAPaHa03g17410.1
CDS
part_ofPaHa03g17410.1-CDS-3-1787993825:55172177..55172376mRNAPaHa03g17410.1
CDS
part_ofPaHa03g17410.1-CDS-3-1787993825:55172504..55173155mRNAPaHa03g17410.1
CDS
part_ofPaHa03g17410.1-CDS-3-1787993825:55173256..55173527mRNAPaHa03g17410.1
exon
part_ofPaHa03g17410.1-exon-3-1787993825:55170093..55170889mRNAPaHa03g17410.1
exon
part_ofPaHa03g17410.1-exon-3-1787993825:55171432..55171676mRNAPaHa03g17410.1
exon
part_ofPaHa03g17410.1-exon-3-1787993825:55172177..55172376mRNAPaHa03g17410.1
exon
part_ofPaHa03g17410.1-exon-3-1787993825:55172504..55173155mRNAPaHa03g17410.1
exon
part_ofPaHa03g17410.1-exon-3-1787993825:55173256..55173527mRNAPaHa03g17410.1
