Hass · mRNA

PaHa03g18760.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,182
bp
3:58,892,382–58,895,203
genomic location
Record overview

Feature identity

Identifier
PaHa03g18760.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,182 bp
Genomic location
3:58,892,382–58,895,203
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: MYB12 | Seed ortholog: 337451.A0A443ND81 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@33090|DqE-36, Myb_DNA-binding@35493|FSr-38, Myb_DNA-binding@58023|HJu-40!
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008285 negative regulation of cell population proliferation; GO:0009416 response to light stimulus; GO:0009651 response to salt stress; GO:0009723 response to ethylene; GO:0009733 response to auxin; GO:0009813 flavonoid biosynthetic process; GO:0010224 response to UV-B; GO:0045893 positive regulation of DNA-templated transcription; GO:0048640 negative regulation of developmental growth; GO:0051555 flavonol biosynthetic process; GO:1900386 positive regulation of flavonol biosynthetic process; GO:1990841 promoter-specific chromatin binding
KEGG
KO: K09422 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa03g18760.1-CDS-3-1787993825:58892382..58893300
part_of
CDSPaHa03g18760.1-CDS-3-1787993825:58894444..58894573
part_of
CDSPaHa03g18760.1-CDS-3-1787993825:58895071..58895203
part_of
exonPaHa03g18760.1-exon-3-1787993825:58892382..58893300
part_of
exonPaHa03g18760.1-exon-3-1787993825:58894444..58894573
part_of
exonPaHa03g18760.1-exon-3-1787993825:58895071..58895203
part_of