Hass · mRNA

PaHa03g18860.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,250
bp
3:59,041,616–59,045,875
genomic location
Record overview

Feature identity

Identifier
PaHa03g18860.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,250 bp
Genomic location
3:59,041,616–59,045,875
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC120105689 | Seed ortholog: 337451.A0A3S4NFB8 | COG: S | eggNOG OG: Myb_DNA-binding@131567|Se-18, Myb_DNA-binding@1437183|DKy-35, Myb_DNA-binding@33090|Bhq-32, Response_reg|AT38GL@131567, Response_reg|AT38GL@2759, Response_reg|AT38GL@33090, Response_reg|AT38GL@3398
Gene Ontology
GO:0000156 phosphorelay response regulator activity; GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0009414 response to water deprivation; GO:0009507 chloroplast; GO:0009723 response to ethylene; GO:0009735 response to cytokinin; GO:0009736 cytokinin-activated signaling pathway; GO:0009873 ethylene-activated signaling pathway; GO:0010082 regulation of root meristem growth; GO:0010119 regulation of stomatal movement; GO:0010150 leaf senescence; GO:0010380 regulation of chlorophyll biosynthetic process; GO:0010492 maintenance of shoot apical meristem identity; GO:0031537 regulation of anthocyanin metabolic process; GO:0048364 root development; GO:0048367 shoot system development; GO:0071368 cellular response to cytokinin stimulus; GO:0080022 primary root development; GO:0080036 regulation of cytokinin-activated signaling pathway; GO:0080113 regulation of seed growth; GO:0090506 axillary shoot meristem initiation; GO:1990110 callus formation
KEGG
KO: K14491 | Pathway: 04075 | BRITE: 00001
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa03g18860.1-CDS-3-1787993825:59041616..59041784
part_of
CDSPaHa03g18860.1-CDS-3-1787993825:59042560..59042712
part_of
CDSPaHa03g18860.1-CDS-3-1787993825:59042804..59043184
part_of
CDSPaHa03g18860.1-CDS-3-1787993825:59043632..59043708
part_of
CDSPaHa03g18860.1-CDS-3-1787993825:59044406..59045875
part_of
exonPaHa03g18860.1-exon-3-1787993825:59041616..59041784
part_of
exonPaHa03g18860.1-exon-3-1787993825:59042560..59042712
part_of
exonPaHa03g18860.1-exon-3-1787993825:59042804..59043184
part_of
exonPaHa03g18860.1-exon-3-1787993825:59043632..59043708
part_of
exonPaHa03g18860.1-exon-3-1787993825:59044406..59045875
part_of