Hass · gene

PaHa_c131g00160

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,152
bp
unplaced_contig_131:25,400–26,551
genomic location
Record overview

Feature identity

Identifier
PaHa_c131g00160
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,152 bp
Genomic location
unplaced_contig_131:25,400–26,551
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: dcl2 | Seed ortholog: 1507870.A0A1V8S8U5 | COG: S | eggNOG OG: DEAD@131567|QR-16, Dicer_dimer@131567|A-1*, Dicer_dimer@2759|B-2, Helicase_C|SW4HDB@4751, Ribonuclease_3@131567|i-6, Ribonuclease_3@2759|GZ-11
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000212 meiotic spindle organization; GO:0000911 cytokinesis by cell plate formation; GO:0001525 angiogenesis; GO:0001834 trophectodermal cell proliferation; GO:0001942 hair follicle development; GO:0002119 nematode larval development; GO:0002230 positive regulation of defense response to virus by host; GO:0003677 DNA binding; GO:0003725 double-stranded RNA binding; GO:0003727 single-stranded RNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0004521 RNA endonuclease activity; GO:0004525 ribonuclease III activity; GO:0004530 deoxyribonuclease I activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005793 endoplasmic reticulum-Golgi intermediate compartment; GO:0005829 cytosol; GO:0006309 apoptotic DNA fragmentation; GO:0006353 DNA-templated transcription termination; GO:0006396 RNA processing; GO:0006401 RNA catabolic process; GO:0006995 cellular response to nitrogen starvation; GO:0007279 pole cell formation; GO:0007284 spermatogonial cell division; GO:0007294 germarium-derived oocyte fate determination; GO:0007367 segment polarity determination; GO:0007626 locomotory behavior; GO:0008186 ATP-dependent activity, acting on RNA; GO:0008283 cell population proliferation; GO:0008355 olfactory learning; GO:0008593 regulation of Notch signaling pathway; GO:0009047 dosage compensation by hyperactivation of X chromosome; GO:0009507 chloroplast; GO:0009597 detection of virus; GO:0009616 RNAi-mediated antiviral immune response; GO:0009791 post-embryonic development; GO:0009880 embryonic pattern specification; GO:0009908 flower development; GO:0009944 polarity specification of adaxial/abaxial axis; GO:0010050 vegetative phase change; GO:0010070 zygote asymmetric cell division; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0010267 ta-siRNA processing; GO:0010445 nuclear dicing body; GO:0010468 regulation of gene expression; GO:0010492 maintenance of shoot apical meristem identity; GO:0010586 miRNA metabolic process; GO:0010595 positive regulation of endothelial cell migration; GO:0010599 lsiRNA processing; GO:0010626 negative regulation of Schwann cell proliferation; GO:0010628 positive regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0010660 regulation of muscle cell apoptotic process; GO:0010804 negative regulation of tumor necrosis factor-mediated signaling pathway; GO:0014040 positive regulation of Schwann cell differentiation; GO:0014835 myoblast differentiation involved in skeletal muscle regeneration; GO:0016078 tRNA decay; GO:0016442 RISC complex; GO:0016887 ATP hydrolysis activity; GO:0019827 stem cell population maintenance; GO:0019904 protein domain specific binding; GO:0021522 spinal cord motor neuron differentiation; GO:0021591 ventricular system development; GO:0021675 nerve development; GO:0021889 olfactory bulb interneuron differentiation; GO:0021987 cerebral cortex development; GO:0030324 lung development; GO:0030326 embryonic limb morphogenesis; GO:0030422 siRNA processing; GO:0030424 axon; GO:0030425 dendrite; GO:0030426 growth cone; GO:0030727 germarium-derived female germ-line cyst formation; GO:0031053 primary miRNA processing; GO:0031054 pre-miRNA processing; GO:0031069 hair follicle morphogenesis; GO:0031507 heterochromatin formation; GO:0031508 pericentric heterochromatin formation; GO:0031641 regulation of myelination; GO:0031643 positive regulation of myelination; GO:0032290 peripheral nervous system myelin formation; GO:0032720 negative regulation of tumor necrosis factor production; GO:0032967 positive regulation of collagen biosynthetic process; GO:0035116 embryonic hindlimb morphogenesis; GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing; GO:0035195 miRNA-mediated post-transcriptional gene silencing; GO:0035196 miRNA processing; GO:0035197 siRNA binding; GO:0035198 miRNA binding; GO:0035262 gonad morphogenesis; GO:0035264 multicellular organism growth; GO:0035279 miRNA-mediated gene silencing by mRNA destabilization; GO:0036464 cytoplasmic ribonucleoprotein granule; GO:0040034 regulation of development, heterochronic; GO:0042078 germ-line stem cell division; GO:0042487 regulation of odontogenesis of dentin-containing tooth; GO:0042594 response to starvation; GO:0044027 negative regulation of gene expression via chromosomal CpG island methylation; GO:0045069 regulation of viral genome replication; GO:0045089 positive regulation of innate immune response; GO:0045448 mitotic cell cycle, embryonic; GO:0045589 regulation of regulatory T cell differentiation; GO:0045595 regulation of cell differentiation; GO:0045664 regulation of neuron differentiation; GO:0045752 positive regulation of Toll signaling pathway; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048255 mRNA stabilization; GO:0048317 seed morphogenesis; GO:0048471 perinuclear region of cytoplasm; GO:0048536 spleen development; GO:0048565 digestive tract development; GO:0048608 reproductive structure development; GO:0048713 regulation of oligodendrocyte differentiation; GO:0048730 epidermis morphogenesis; GO:0048754 branching morphogenesis of an epithelial tube; GO:0048812 neuron projection morphogenesis; GO:0048813 dendrite morphogenesis; GO:0050727 regulation of inflammatory response; GO:0050767 regulation of neurogenesis; GO:0050830 defense response to Gram-positive bacterium; GO:0051214 RNAi-mediated antiviral immunity against RNA virus; GO:0051216 cartilage development; GO:0051225 spindle assembly; GO:0051252 regulation of RNA metabolic process; GO:0051607 defense response to virus; GO:0051726 regulation of cell cycle; GO:0055013 cardiac muscle cell development; GO:0060119 inner ear receptor cell development; GO:0060253 negative regulation of glial cell proliferation; GO:0060576 intestinal epithelial cell development; GO:0061309 cardiac neural crest cell development involved in outflow tract morphogenesis; GO:0061548 ganglion development; GO:0070062 extracellular exosome; GO:0070173 regulation of enamel mineralization; GO:0070301 cellular response to hydrogen peroxide; GO:0070549 siRNA-mediated gene silencing by inhibition of translation; GO:0070578 RISC-loading complex; GO:0070883 pre-miRNA binding; GO:0070922 RISC complex assembly; GO:0071333 cellular response to glucose stimulus; GO:0071335 hair follicle cell proliferation; GO:0071356 cellular response to tumor necrosis factor; GO:0071456 cellular response to hypoxia; GO:0098586 cellular response to virus; GO:0098795 global gene silencing by mRNA cleavage; GO:0098978 glutamatergic synapse; GO:0099092 postsynaptic density, intracellular component; GO:0110064 lncRNA catabolic process; GO:1903142 positive regulation of establishment of endothelial barrier; GO:1904899 positive regulation of hepatic stellate cell proliferation; GO:1904906 positive regulation of endothelial cell-matrix adhesion; GO:1905564 positive regulation of vascular endothelial cell proliferation; GO:2000034 regulation of seed maturation; GO:2000628 regulation of miRNA metabolic process; GO:2000630 positive regulation of miRNA metabolic process; GO:2000736 regulation of stem cell differentiation
KEGG
EC: ec:3.1.26.3 | KO: K03685, K11592 | Pathway: 03008, 05206 | BRITE: 00001, 01000, 03009, 03019, 03036
Biological context

Connected feature records

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