Feature identity
- Identifier
- PaHa03g27560.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 795 bp
- Genomic location
- 3:75,047,628–75,052,157
- Strand
- +
Hass · mRNA
PaHa03g27560.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 795
- bp
- 3:75,047,628–75,052,157
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g27560
- eggNOG
- Preferred name: ATHB-1 | Seed ortholog: 337451.A0A3S3M4Q3 | COG: S | eggNOG OG: HALZ@131567|X-6, HALZ@3193|g-7, HALZ@58023|p-8, Homeodomain@131567|XU-17, Homeodomain@2759|ACU-20!, Homeodomain@3193|GUI-31, Homeodomain@35493|BwQ-25, Homeodomain@58023|KGj-34
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009637 response to blue light; GO:0009651 response to salt stress; GO:0009965 leaf morphogenesis; GO:0017148 negative regulation of translation; GO:0042803 protein homodimerization activity; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription
- KEGG
- KO: K09338 | Pathway: 04113, 04148, 04927, 04934, 05202 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g27560.1-protein
derives_frommRNAPaHa03g27560.1
mRNAPaHa03g27560.1
part_ofgenePaHa03g27560
CDS
part_ofPaHa03g27560.1-CDS-3-1787993825:75047628..75047700mRNAPaHa03g27560.1
CDS
part_ofPaHa03g27560.1-CDS-3-1787993825:75048358..75048488mRNAPaHa03g27560.1
CDS
part_ofPaHa03g27560.1-CDS-3-1787993825:75049265..75049504mRNAPaHa03g27560.1
CDS
part_ofPaHa03g27560.1-CDS-3-1787993825:75051807..75052157mRNAPaHa03g27560.1
exon
part_ofPaHa03g27560.1-exon-3-1787993825:75047628..75047700mRNAPaHa03g27560.1
exon
part_ofPaHa03g27560.1-exon-3-1787993825:75048358..75048488mRNAPaHa03g27560.1
exon
part_ofPaHa03g27560.1-exon-3-1787993825:75049265..75049504mRNAPaHa03g27560.1
exon
part_ofPaHa03g27560.1-exon-3-1787993825:75051807..75052157mRNAPaHa03g27560.1
