Feature identity
- Identifier
- PaHa03g28980.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 735 bp
- Genomic location
- 3:77,077,104–77,093,925
- Strand
- −
Hass · mRNA
PaHa03g28980.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 735
- bp
- 3:77,077,104–77,093,925
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g28980
- eggNOG
- Preferred name: SEP3 | Seed ortholog: 337451.A0A3S4NH64 | COG: S | eggNOG OG: K-box@131567|A-1*, K-box@2759|Ah-7, K-box@3398|PR-14!, SRF-TF@131567|A-1*, SRF-TF@2759|C-2!, SRF-TF@3193|jV-20, SRF-TF@3398|DMa-32, SRF-TF@35493|bP-19
- Gene Ontology
- GO:0001708 cell fate specification; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009908 flower development; GO:0010093 specification of floral organ identity; GO:0010214 seed coat development; GO:0048481 plant ovule development; GO:0048833 specification of floral organ number; GO:0080001 mucilage extrusion from seed coat
- KEGG
- KO: K09264 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g28980.1-protein
derives_frommRNAPaHa03g28980.1
mRNAPaHa03g28980.1
part_ofgenePaHa03g28980
CDS
part_ofPaHa03g28980.1-CDS-3-1787993825:77077104..77077188mRNAPaHa03g28980.1
CDS
part_ofPaHa03g28980.1-CDS-3-1787993825:77078392..77078528mRNAPaHa03g28980.1
CDS
part_ofPaHa03g28980.1-CDS-3-1787993825:77079076..77079117mRNAPaHa03g28980.1
CDS
part_ofPaHa03g28980.1-CDS-3-1787993825:77079206..77079247mRNAPaHa03g28980.1
CDS
part_ofPaHa03g28980.1-CDS-3-1787993825:77080064..77080163mRNAPaHa03g28980.1
CDS
part_ofPaHa03g28980.1-CDS-3-1787993825:77080538..77080599mRNAPaHa03g28980.1
CDS
part_ofPaHa03g28980.1-CDS-3-1787993825:77089529..77089610mRNAPaHa03g28980.1
CDS
part_ofPaHa03g28980.1-CDS-3-1787993825:77093741..77093925mRNAPaHa03g28980.1
exon
part_ofPaHa03g28980.1-exon-3-1787993825:77077104..77077188mRNAPaHa03g28980.1
exon
part_ofPaHa03g28980.1-exon-3-1787993825:77078392..77078528mRNAPaHa03g28980.1
exon
part_ofPaHa03g28980.1-exon-3-1787993825:77079076..77079117mRNAPaHa03g28980.1
exon
part_ofPaHa03g28980.1-exon-3-1787993825:77079206..77079247mRNAPaHa03g28980.1
exon
part_ofPaHa03g28980.1-exon-3-1787993825:77080064..77080163mRNAPaHa03g28980.1
exon
part_ofPaHa03g28980.1-exon-3-1787993825:77080538..77080599mRNAPaHa03g28980.1
exon
part_ofPaHa03g28980.1-exon-3-1787993825:77089529..77089610mRNAPaHa03g28980.1
exon
part_ofPaHa03g28980.1-exon-3-1787993825:77093741..77093925mRNAPaHa03g28980.1
