Hass · gene

PaHa_c137g00160

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

444
bp
unplaced_contig_137:19,741–20,184
genomic location
Record overview

Feature identity

Identifier
PaHa_c137g00160
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
444 bp
Genomic location
unplaced_contig_137:19,741–20,184
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: Usp34 | Seed ortholog: 1441469.A0A225B2L8 | COG: S | eggNOG OG: DUF3517@131567|A-1*, DUF3517@33154|B-2!, Mac@4751|BH-8, UCH@131567|Ma-19
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0001701 in utero embryonic development; GO:0001764 neuron migration; GO:0004197 cysteine-type endopeptidase activity; GO:0004843 cysteine-type deubiquitinase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005813 centrosome; GO:0005829 cytosol; GO:0005929 cilium; GO:0006307 DNA alkylation repair; GO:0007179 transforming growth factor beta receptor signaling pathway; GO:0007283 spermatogenesis; GO:0007292 female gamete generation; GO:0007349 cellularization; GO:0008104 intracellular protein localization; GO:0008234 cysteine-type peptidase activity; GO:0008354 primordial germ cell migration; GO:0008583 mystery cell differentiation; GO:0009791 post-embryonic development; GO:0009950 dorsal/ventral axis specification; GO:0016020 membrane; GO:0016055 Wnt signaling pathway; GO:0016558 protein import into peroxisome matrix; GO:0016562 protein import into peroxisome matrix, receptor recycling; GO:0016567 protein ubiquitination; GO:0016579 protein deubiquitination; GO:0021698 cerebellar cortex structural organization; GO:0021766 hippocampus development; GO:0030307 positive regulation of cell growth; GO:0030426 growth cone; GO:0030509 BMP signaling pathway; GO:0030513 positive regulation of BMP signaling pathway; GO:0031625 ubiquitin protein ligase binding; GO:0031647 regulation of protein stability; GO:0032092 positive regulation of protein binding; GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0035192 nuclear cortical migration; GO:0035220 wing disc development; GO:0035520 monoubiquitinated protein deubiquitination; GO:0042752 regulation of circadian rhythm; GO:0043687 post-translational protein modification; GO:0045177 apical part of cell; GO:0045824 negative regulation of innate immune response; GO:0048675 axon extension; GO:0050821 protein stabilization; GO:0050829 defense response to Gram-negative bacterium; GO:0050856 regulation of T cell receptor signaling pathway; GO:0060271 cilium assembly; GO:0061578 K63-linked deubiquitinase activity; GO:0061824 cytosolic ciliogenesis; GO:0070410 co-SMAD binding; GO:0070536 protein K63-linked deubiquitination; GO:0071108 protein K48-linked deubiquitination; GO:0071560 cellular response to transforming growth factor beta stimulus; GO:0071947 protein deubiquitination involved in ubiquitin-dependent protein catabolic process; GO:0090263 positive regulation of canonical Wnt signaling pathway; GO:0098794 postsynapse; GO:0101005 deubiquitinase activity; GO:0140313 molecular sequestering activity; GO:0150052 regulation of postsynapse assembly; GO:0180017 K11-linked deubiquitinase activity; GO:1902018 negative regulation of cilium assembly; GO:1904515 positive regulation of TORC2 signaling; GO:1990000 amyloid fibril formation; GO:1990138 neuron projection extension; GO:1990380 K48-linked deubiquitinase activity
KEGG
EC: ec:3.4.19.12 | KO: K11853 | BRITE: 00001, 01000, 01002, 04121
Biological context

Connected feature records

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