PaHa03g31940.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,262: bp
3:82,339,599–82,346,683: genomic location

Record overview

Feature identity

Identifier: PaHa03g31940.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 2,262 bp
Genomic location: 3:82,339,599–82,346,683
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa03g31940

eggNOG: Preferred name: TSO1 | Seed ortholog: 337451.A0A3S3MPN5 | COG: S | eggNOG OG: TCR@131567|A-1*, TCR@2759|AQ-7!
Gene Ontology: GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0000794 condensed nuclear chromosome; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0001067 transcription regulatory region nucleic acid binding; GO:0003677 DNA binding; GO:0003680 minor groove of adenine-thymine-rich DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0007140 male meiotic nuclear division; GO:0007141 male meiosis I; GO:0007283 spermatogenesis; GO:0007307 eggshell chorion gene amplification; GO:0008150 biological_process; GO:0009934 regulation of meristem structural organization; GO:0010038 response to metal ion; GO:0010235 guard mother cell cytokinesis; GO:0010375 stomatal complex patterning; GO:0010440 stomatal lineage progression; GO:0010481 epidermal cell division; GO:0030003 intracellular monoatomic cation homeostasis; GO:0030849 autosome; GO:0031523 Myb complex; GO:0034728 nucleosome organization; GO:0040027 negative regulation of vulval development; GO:0045892 negative regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046872 metal ion binding; GO:0048444 floral organ morphogenesis; GO:0048477 oogenesis; GO:0051302 regulation of cell division; GO:0070176 DRM complex; GO:0090571 RNA polymerase II transcription repressor complex; GO:0090575 RNA polymerase II transcription regulator complex
KEGG: KO: K10395, K21776 | Pathway: 04218, 04814 | BRITE: 00001, 04812

Biological context