Hass · mRNA

PaHa03g32690.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,634
bp
3:83,627,625–83,652,090
genomic location
Record overview

Feature identity

Identifier
PaHa03g32690.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,634 bp
Genomic location
3:83,627,625–83,652,090
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: NIG | Seed ortholog: 337451.A0A3S3NDI5 | COG: S | eggNOG OG: ArfGap@131567|A-1*, ArfGap@2759|Cf-9, ArfGap@3398|AeS-22, ArfGap@35493|sF-18
Gene Ontology
GO:0001675 acrosome assembly; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0005096 GTPase activator activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005930 axoneme; GO:0005935 cellular bud neck; GO:0005938 cell cortex; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006897 endocytosis; GO:0007289 spermatid nucleus differentiation; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0010512 negative regulation of phosphatidylinositol biosynthetic process; GO:0016020 membrane; GO:0030437 ascospore formation; GO:0030479 actin cortical patch; GO:0031410 cytoplasmic vesicle; GO:0043025 neuronal cell body; GO:0045109 intermediate filament organization; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0140297 DNA-binding transcription factor binding
KEGG
KO: K12486, K12493, K15044, K17969, K20474 | Pathway: 04137, 04144 | BRITE: 00001, 03019, 03029, 04131
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa03g32690.1-CDS-3-1787993825:83627625..83627760
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83628069..83628114
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83628235..83628376
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83630934..83631017
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83631132..83631236
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83631356..83631634
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83631720..83632187
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83634777..83635256
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83635484..83635577
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83635864..83635925
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83636045..83636132
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83636361..83636422
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83640612..83640714
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83640889..83640945
part_of
CDSPaHa03g32690.1-CDS-3-1787993825:83651663..83652090
part_of
exonPaHa03g32690.1-exon-3-1787993825:83627625..83627760
part_of
exonPaHa03g32690.1-exon-3-1787993825:83628069..83628114
part_of
exonPaHa03g32690.1-exon-3-1787993825:83628235..83628376
part_of
exonPaHa03g32690.1-exon-3-1787993825:83630934..83631017
part_of
exonPaHa03g32690.1-exon-3-1787993825:83631132..83631236
part_of
exonPaHa03g32690.1-exon-3-1787993825:83631356..83631634
part_of
exonPaHa03g32690.1-exon-3-1787993825:83631720..83632187
part_of
exonPaHa03g32690.1-exon-3-1787993825:83634777..83635256
part_of
exonPaHa03g32690.1-exon-3-1787993825:83635484..83635577
part_of
exonPaHa03g32690.1-exon-3-1787993825:83635864..83635925
part_of
exonPaHa03g32690.1-exon-3-1787993825:83636045..83636132
part_of
exonPaHa03g32690.1-exon-3-1787993825:83636361..83636422
part_of
exonPaHa03g32690.1-exon-3-1787993825:83640612..83640714
part_of
exonPaHa03g32690.1-exon-3-1787993825:83640889..83640945
part_of
exonPaHa03g32690.1-exon-3-1787993825:83651663..83652090
part_of