Hass · gene

PaHa_c334g00020

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

990
bp
unplaced_contig_334:2,005–3,184
genomic location
Record overview

Feature identity

Identifier
PaHa_c334g00020
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
990 bp
Genomic location
unplaced_contig_334:2,005–3,184
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: UPC2 | Seed ortholog: 675120.N1PRD5 | COG: S | eggNOG OG: Fungal_trans_2@131567|BA-7, Fungal_trans_2@4751|AeS-18, Zn_clus@131567|A-1*, Zn_clus@2759|JL-12, Zn_clus@33154|Ri-14, Zn_clus@4751|CGB-25
Gene Ontology
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0005575 cellular_component; GO:0005737 cytoplasm; GO:0006696 ergosterol biosynthetic process; GO:0008204 ergosterol metabolic process; GO:0008270 zinc ion binding; GO:0008610 lipid biosynthetic process; GO:0016020 membrane; GO:0016125 sterol metabolic process; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048471 perinuclear region of cytoplasm; GO:0070452 positive regulation of ergosterol biosynthetic process; GO:0071456 cellular response to hypoxia; GO:0071466 cellular response to xenobiotic stimulus; GO:1900436 positive regulation of filamentous growth of a population of unicellular organisms in response to starvation; GO:2000911 positive regulation of sterol import; GO:2001038 regulation of cellular response to drug
Biological context

Connected feature records

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