Feature identity
- Identifier
- PaHa_c344g00040
- Feature type
- gene
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 660 bp
- Genomic location
- unplaced_contig_344:5,369–6,122
- Strand
- +
Hass · gene
PaHa_c344g00040
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 660
- bp
- unplaced_contig_344:5,369–6,122
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: tfs1 | Seed ortholog: 1507870.A0A1V8SNQ0 | COG: S | eggNOG OG: Med26@131567|LG-13!, TFIIS_C@131567|Bq-8, TFIIS_M@131567|A-1*, TFIIS_M@2759|e-5
- Gene Ontology
- GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000993 RNA polymerase II complex binding; GO:0001193 maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II; GO:0003711 transcription elongation factor activity; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006362 transcription elongation by RNA polymerase I; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006368 transcription elongation by RNA polymerase II; GO:0006383 transcription by RNA polymerase III; GO:0008270 zinc ion binding; GO:0031440 regulation of mRNA 3'-end processing; GO:0031564 transcription antitermination; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0042797 tRNA transcription by RNA polymerase III; GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly
- KEGG
- KO: K03145 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
genePaHa_c344g00040
