Hass · gene

PaHa_c355g00060

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,429
bp
unplaced_contig_355:12,880–16,387
genomic location
Record overview

Feature identity

Identifier
PaHa_c355g00060
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,429 bp
Genomic location
unplaced_contig_355:12,880–16,387
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: FG09407.1 | Seed ortholog: 1149755.A0A2J6QXY6 | COG: S | eggNOG OG: ARID@131567|A-1*, ARID@2759|b-5, BRCT_2@131567|A-1*, BRCT_2@2759|Ib-13, Myb_DNA-bind_2@2759|A-1, Rap1_C@2759|A-1
Gene Ontology
GO:0000076 DNA replication checkpoint signaling; GO:0000118 histone deacetylase complex; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000128 flocculation; GO:0000228 nuclear chromosome; GO:0000723 telomere maintenance; GO:0000725 recombinational repair; GO:0000727 double-strand break repair via break-induced replication; GO:0000781 chromosome, telomeric region; GO:0000783 nuclear telomere cap complex; GO:0000785 chromatin; GO:0000976 transcription cis-regulatory region binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0001094 TFIID-class transcription factor complex binding; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003680 minor groove of adenine-thymine-rich DNA binding; GO:0003691 double-stranded telomeric DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005657 replication fork; GO:0005667 transcription regulator complex; GO:0005694 chromosome; GO:0005737 cytoplasm; GO:0005773 vacuole; GO:0005829 cytosol; GO:0006110 regulation of glycolytic process; GO:0006270 DNA replication initiation; GO:0006355 regulation of DNA-templated transcription; GO:0007004 telomere maintenance via telomerase; GO:0007095 mitotic G2 DNA damage checkpoint signaling; GO:0007124 pseudohyphal growth; GO:0007533 mating type switching; GO:0008150 biological_process; GO:0008301 DNA binding, bending; GO:0010569 regulation of double-strand break repair via homologous recombination; GO:0010628 positive regulation of gene expression; GO:0010833 telomere maintenance via telomere lengthening; GO:0016233 telomere capping; GO:0016604 nuclear body; GO:0017025 TBP-class protein binding; GO:0019760 glucosinolate metabolic process; GO:0019902 phosphatase binding; GO:0030295 protein kinase activator activity; GO:0030447 filamentous growth; GO:0030466 silent mating-type cassette heterochromatin formation; GO:0031261 DNA replication preinitiation complex; GO:0031492 nucleosomal DNA binding; GO:0031509 subtelomeric heterochromatin formation; GO:0031848 protection from non-homologous end joining at telomere; GO:0032204 regulation of telomere maintenance; GO:0032205 negative regulation of telomere maintenance; GO:0032206 positive regulation of telomere maintenance; GO:0032991 protein-containing complex; GO:0032993 protein-DNA complex; GO:0033314 mitotic DNA replication checkpoint signaling; GO:0034599 cellular response to oxidative stress; GO:0035556 intracellular signal transduction; GO:0042162 telomeric repeat DNA binding; GO:0042393 histone binding; GO:0043123 positive regulation of canonical NF-kappaB signal transduction; GO:0043565 sequence-specific DNA binding; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048235 pollen sperm cell differentiation; GO:0048239 negative regulation of DNA recombination at telomere; GO:0048555 generative cell nucleus; GO:0048556 microsporocyte nucleus; GO:0051880 G-quadruplex DNA binding; GO:0060963 positive regulation of ribosomal protein gene transcription by RNA polymerase II; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0061849 telomeric G-quadruplex DNA binding; GO:0070182 DNA polymerase binding; GO:0070187 shelterin complex; GO:0070198 protein localization to chromosome, telomeric region; GO:0070200 establishment of protein localization to telomere; GO:0071169 establishment of protein localization to chromatin; GO:0071919 G-quadruplex DNA formation; GO:0098505 G-rich strand telomeric DNA binding; GO:0140806 NAD+-protein-aspartate ADP-ribosyltransferase activity; GO:0140807 NAD+-protein-glutamate ADP-ribosyltransferase activity; GO:1901224 positive regulation of non-canonical NF-kappaB signal transduction; GO:1903466 regulation of mitotic DNA replication initiation; GO:1990641 response to iron ion starvation; GO:2000221 negative regulation of pseudohyphal growth; GO:2001038 regulation of cellular response to drug
KEGG
EC: ec:2.4.2.30 | KO: K11113 | Pathway: 03410 | BRITE: 00001, 03032
Biological context

Connected feature records

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