Hass · gene

PaHa_c387g00070

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,071
bp
unplaced_contig_387:6,820–7,890
genomic location
Record overview

Feature identity

Identifier
PaHa_c387g00070
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,071 bp
Genomic location
unplaced_contig_387:6,820–7,890
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: hap2 | Seed ortholog: 983964.A0A2T4ANQ7 | COG: S | eggNOG OG: CBFB_NFYA@2759|A-1
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0000792 heterochromatin; GO:0000976 transcription cis-regulatory region binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001217 DNA-binding transcription repressor activity; GO:0001221 transcription coregulator binding; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005721 pericentric heterochromatin; GO:0006109 regulation of carbohydrate metabolic process; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0009408 response to heat; GO:0009414 response to water deprivation; GO:0009555 pollen development; GO:0009567 double fertilization forming a zygote and endosperm; GO:0009738 abscisic acid-activated signaling pathway; GO:0009785 blue light signaling pathway; GO:0009793 embryo development ending in seed dormancy; GO:0009888 tissue development; GO:0010262 somatic embryogenesis; GO:0010468 regulation of gene expression; GO:0016602 CCAAT-binding factor complex; GO:0032993 protein-DNA complex; GO:0043565 sequence-specific DNA binding; GO:0043708 cell adhesion involved in biofilm formation; GO:0045466 R7 cell differentiation; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048316 seed development; GO:0048510 regulation of timing of transition from vegetative to reproductive phase; GO:0055046 microgametogenesis; GO:0060237 regulation of fungal-type cell wall organization; GO:0071280 cellular response to copper ion; GO:0071469 cellular response to alkaline pH; GO:0090575 RNA polymerase II transcription regulator complex; GO:0110039 positive regulation of nematode male tail tip morphogenesis; GO:0140585 promoter-enhancer loop anchoring activity; GO:1900407 regulation of cellular response to oxidative stress; GO:1903715 regulation of aerobic respiration; GO:2000036 regulation of stem cell population maintenance; GO:2000648 positive regulation of stem cell proliferation
KEGG
KO: K08064 | Pathway: 04612, 05017, 05152 | BRITE: 00001, 03000
Biological context

Connected feature records

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