Hass · gene

PaHa_c428g00020

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

462
bp
unplaced_contig_428:1,013–1,568
genomic location
Record overview

Feature identity

Identifier
PaHa_c428g00020
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
462 bp
Genomic location
unplaced_contig_428:1,013–1,568
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: MMS2 | Seed ortholog: 1507870.A0A1V8T105 | COG: S | eggNOG OG: UQ_con@131567|DJ-11, UQ_con@2759|EN-12, UQ_con@470018|QKB-46
Gene Ontology
GO:0000151 ubiquitin ligase complex; GO:0000209 protein polyubiquitination; GO:0000329 fungal-type vacuole membrane; GO:0000729 DNA double-strand break processing; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005783 endoplasmic reticulum; GO:0005829 cytosol; GO:0006282 regulation of DNA repair; GO:0006301 DNA damage tolerance; GO:0006355 regulation of DNA-templated transcription; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0006974 DNA damage response; GO:0008150 biological_process; GO:0010976 positive regulation of neuron projection development; GO:0010994 free ubiquitin chain polymerization; GO:0014069 postsynaptic density; GO:0016567 protein ubiquitination; GO:0030154 cell differentiation; GO:0030335 positive regulation of cell migration; GO:0031371 ubiquitin conjugating enzyme complex; GO:0031372 UBC13-MMS2 complex; GO:0031624 ubiquitin conjugating enzyme binding; GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0032991 protein-containing complex; GO:0042275 error-free postreplication DNA repair; GO:0043005 neuron projection; GO:0043068 positive regulation of programmed cell death; GO:0043123 positive regulation of canonical NF-kappaB signal transduction; GO:0043204 perikaryon; GO:0043524 negative regulation of neuron apoptotic process; GO:0044395 protein targeting to vacuolar membrane; GO:0045739 positive regulation of DNA repair; GO:0045893 positive regulation of DNA-templated transcription; GO:0046330 positive regulation of JNK cascade; GO:0051965 positive regulation of synapse assembly; GO:0061057 peptidoglycan recognition protein signaling pathway; GO:0061631 ubiquitin conjugating enzyme activity; GO:0062040 fungal biofilm matrix; GO:0070062 extracellular exosome; GO:0070534 protein K63-linked ubiquitination; GO:0090325 regulation of locomotion involved in locomotory behavior; GO:0098978 glutamatergic synapse; GO:1902523 positive regulation of protein K63-linked ubiquitination; GO:1902533 positive regulation of intracellular signal transduction; GO:1902916 positive regulation of protein polyubiquitination; GO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway; GO:2000008 regulation of protein localization to cell surface; GO:2000781 positive regulation of double-strand break repair
KEGG
EC: ec:1.14.19.77 | KO: K10704, K26392 | Pathway: 00565, 01100, 04624, 05131 | BRITE: 00001, 02000, 03400
Biological context

Connected feature records

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