Feature identity
- Identifier
- PaHa_c99g00030
- Feature type
- gene
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 447 bp
- Genomic location
- unplaced_contig_99:2,828–3,274
- Strand
- −
Hass · gene
PaHa_c99g00030
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 447
- bp
- unplaced_contig_99:2,828–3,274
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: Cstf2 | Seed ortholog: 1658172.A0A1B7P0I2 | COG: COG0724 | eggNOG OG: CSTF2_hinge@2759|A-1, CSTF_C@2759|A-1, RRM_1@131567|HCP-31
- Gene Ontology
- GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005829 cytosol; GO:0005847 mRNA cleavage and polyadenylation specificity factor complex; GO:0005848 mRNA cleavage stimulating factor complex; GO:0005849 mRNA cleavage factor complex; GO:0006397 mRNA processing; GO:0030846 termination of RNA polymerase II transcription, poly(A)-coupled; GO:0030847 termination of RNA polymerase II transcription, exosome-dependent; GO:0031124 mRNA 3'-end processing; GO:0031126 sno(s)RNA 3'-end processing; GO:0033620 Mei2 nuclear dot complex; GO:0033621 nuclear mRNA surveillance of meiosis-specific transcripts; GO:0060090 molecular adaptor activity; GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway
- KEGG
- EC: ec:4.3.1.17, ec:4.3.1.19 | KO: K14407 | Pathway: 03015 | Module: M00570 | BRITE: 00001, 03019
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPaHa_c99g00030.1
part_ofgenePaHa_c99g00030
