Feature identity
- Identifier
- PaHa03g36370.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,347 bp
- Genomic location
- 3:89,423,530–89,430,296
- Strand
- +
Hass · mRNA
PaHa03g36370.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,347
- bp
- 3:89,423,530–89,430,296
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g36370
- eggNOG
- Preferred name: SYN3 | Seed ortholog: 337451.A0A443NGZ5 | COG: S | eggNOG OG: Rad21_Rec8@131567|AQ-7, Rad21_Rec8@33090|YZ-23, Rad21_Rec8_N@131567|A-1*, Rad21_Rec8_N@2759|Ae-8, Rad21_Rec8_N@33090|NV-16, Rad21_Rec8_N@3398|SE-18
- Gene Ontology
- GO:0000278 mitotic cell cycle; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003684 damaged DNA binding; GO:0003690 double-stranded DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0009555 pollen development; GO:0009561 megagametogenesis; GO:0019901 protein kinase binding; GO:0043565 sequence-specific DNA binding; GO:0061776 ATP-dependent topological DNA co-entrapment activity; GO:0106222 lncRNA binding; GO:0140297 DNA-binding transcription factor binding
- KEGG
- KO: K06670 | Pathway: 04110, 04111, 04113 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g36370.1-protein
derives_frommRNAPaHa03g36370.1
mRNAPaHa03g36370.1
part_ofgenePaHa03g36370
CDS
part_ofPaHa03g36370.1-CDS-3-1787993825:89423530..89423626mRNAPaHa03g36370.1
CDS
part_ofPaHa03g36370.1-CDS-3-1787993825:89423725..89423802mRNAPaHa03g36370.1
CDS
part_ofPaHa03g36370.1-CDS-3-1787993825:89423894..89424169mRNAPaHa03g36370.1
CDS
part_ofPaHa03g36370.1-CDS-3-1787993825:89427673..89427795mRNAPaHa03g36370.1
CDS
part_ofPaHa03g36370.1-CDS-3-1787993825:89428121..89428183mRNAPaHa03g36370.1
CDS
part_ofPaHa03g36370.1-CDS-3-1787993825:89428276..89428390mRNAPaHa03g36370.1
CDS
part_ofPaHa03g36370.1-CDS-3-1787993825:89429702..89430296mRNAPaHa03g36370.1
exon
part_ofPaHa03g36370.1-exon-3-1787993825:89423530..89423626mRNAPaHa03g36370.1
exon
part_ofPaHa03g36370.1-exon-3-1787993825:89423725..89423802mRNAPaHa03g36370.1
exon
part_ofPaHa03g36370.1-exon-3-1787993825:89423894..89424169mRNAPaHa03g36370.1
exon
part_ofPaHa03g36370.1-exon-3-1787993825:89427673..89427795mRNAPaHa03g36370.1
exon
part_ofPaHa03g36370.1-exon-3-1787993825:89428121..89428183mRNAPaHa03g36370.1
exon
part_ofPaHa03g36370.1-exon-3-1787993825:89428276..89428390mRNAPaHa03g36370.1
exon
part_ofPaHa03g36370.1-exon-3-1787993825:89429702..89430296mRNAPaHa03g36370.1
