Feature identity
- Identifier
- PaHa03g40370.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 870 bp
- Genomic location
- 3:95,949,708–95,957,360
- Strand
- −
Hass · mRNA
PaHa03g40370.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 870
- bp
- 3:95,949,708–95,957,360
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g40370
- eggNOG
- Preferred name: LOC107787141 | Seed ortholog: 337451.A0A443NHU8 | COG: S | eggNOG OG: Linker_histone@131221|Cb-10, Linker_histone@131567|C-2!, Myb_DNA-binding@131567|uI-23, Myb_DNA-binding@2759|yX-24, Myb_DNA-binding@3193|CBn-33, Myb_DNA-binding@3398|SBu-49
- Gene Ontology
- GO:0000791 euchromatin; GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0043565 sequence-specific DNA binding
- KEGG
- EC: ec:3.4.19.12 | KO: K09422 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g40370.1-protein
derives_frommRNAPaHa03g40370.1
mRNAPaHa03g40370.1
part_ofgenePaHa03g40370
CDS
part_ofPaHa03g40370.1-CDS-3-1787993825:95949708..95949739mRNAPaHa03g40370.1
CDS
part_ofPaHa03g40370.1-CDS-3-1787993825:95949832..95950114mRNAPaHa03g40370.1
CDS
part_ofPaHa03g40370.1-CDS-3-1787993825:95950334..95950417mRNAPaHa03g40370.1
CDS
part_ofPaHa03g40370.1-CDS-3-1787993825:95953082..95953166mRNAPaHa03g40370.1
CDS
part_ofPaHa03g40370.1-CDS-3-1787993825:95956289..95956524mRNAPaHa03g40370.1
CDS
part_ofPaHa03g40370.1-CDS-3-1787993825:95957211..95957360mRNAPaHa03g40370.1
exon
part_ofPaHa03g40370.1-exon-3-1787993825:95949708..95949739mRNAPaHa03g40370.1
exon
part_ofPaHa03g40370.1-exon-3-1787993825:95949832..95950114mRNAPaHa03g40370.1
exon
part_ofPaHa03g40370.1-exon-3-1787993825:95950334..95950417mRNAPaHa03g40370.1
exon
part_ofPaHa03g40370.1-exon-3-1787993825:95953082..95953166mRNAPaHa03g40370.1
exon
part_ofPaHa03g40370.1-exon-3-1787993825:95956289..95956524mRNAPaHa03g40370.1
exon
part_ofPaHa03g40370.1-exon-3-1787993825:95957211..95957360mRNAPaHa03g40370.1
