Feature identity
- Identifier
- PaHa01g12460.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,139 bp
- Genomic location
- 1:19,747,629–19,778,655
- Strand
- +
Hass · mRNA
PaHa01g12460.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,139
- bp
- 1:19,747,629–19,778,655
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g12460
- eggNOG
- Preferred name: SIGF | Seed ortholog: 337451.A0A443NLF5 | COG: S | eggNOG OG: Sigma70_r2@131567|AQM-18!, Sigma70_r2@3398|LAZ-28, Sigma70_r3@131567|C-2!, Sigma70_r3@3193|c-5, Sigma70_r4@131567|Bnn-30, Sigma70_r4@58023|GWX-43
- Gene Ontology
- GO:0005515 protein binding; GO:0006352 DNA-templated transcription initiation; GO:0009507 chloroplast; GO:0009536 plastid; GO:0016987 sigma factor activity; GO:0045893 positive regulation of DNA-templated transcription; GO:0071482 cellular response to light stimulus; GO:0071483 cellular response to blue light; GO:0090351 seedling development
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g12460.1-protein
derives_frommRNAPaHa01g12460.1
mRNAPaHa01g12460.1
part_ofgenePaHa01g12460
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19747629..19747655mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19747736..19748043mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19751824..19751975mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19753491..19753630mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19761264..19761391mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19761716..19761958mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19764229..19764508mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19764624..19764854mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19772601..19772741mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19776735..19776932mRNAPaHa01g12460.1
CDS
part_ofPaHa01g12460.1-CDS-1-1787993825:19778365..19778655mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19747629..19747655mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19747736..19748043mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19751824..19751975mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19753491..19753630mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19761264..19761391mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19761716..19761958mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19764229..19764508mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19764624..19764854mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19772601..19772741mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19776735..19776932mRNAPaHa01g12460.1
exon
part_ofPaHa01g12460.1-exon-1-1787993825:19778365..19778655mRNAPaHa01g12460.1
