Feature identity
- Identifier
- PaHa04g00940.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,106 bp
- Genomic location
- 4:3,238,225–3,252,557
- Strand
- +
Hass · mRNA
PaHa04g00940.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,106
- bp
- 4:3,238,225–3,252,557
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g00940
- eggNOG
- Preferred name: LOC104609048 | Seed ortholog: 337451.A0A443PL38 | COG: S | eggNOG OG: Homeodomain@131567|XU-17, Homeodomain@2759|ACT-20, Homeodomain@33090|OfY-37, PHD@131567|A-1*, PHD@2759|BtH-21
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009733 response to auxin; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription
- KEGG
- EC: ec:2.1.1.354, ec:3.1.3.16, ec:5.6.2.6 | KO: K02606, K09313, K09331, K09995, K10896, K11492, K11643, K11657, K12599, K14818, K14959, K18998, K22748, K24882, K26244 | Pathway: 00310, 01100, 03018, 03082, 04111, 04113 | BRITE: 00001, 01000, 01009, 03000, 03009, 03019, 03021, 03032, 03036, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g00940.1-protein
derives_frommRNAPaHa04g00940.1
mRNAPaHa04g00940.1
part_ofgenePaHa04g00940
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3238225..3238646mRNAPaHa04g00940.1
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3240685..3240850mRNAPaHa04g00940.1
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3241028..3241151mRNAPaHa04g00940.1
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3242103..3242215mRNAPaHa04g00940.1
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3242768..3243115mRNAPaHa04g00940.1
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3243733..3243963mRNAPaHa04g00940.1
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3245595..3245684mRNAPaHa04g00940.1
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3246813..3246863mRNAPaHa04g00940.1
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3248389..3248637mRNAPaHa04g00940.1
CDS
part_ofPaHa04g00940.1-CDS-4-1787993825:3252246..3252557mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3238225..3238646mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3240685..3240850mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3241028..3241151mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3242103..3242215mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3242768..3243115mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3243733..3243963mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3245595..3245684mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3246813..3246863mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3248389..3248637mRNAPaHa04g00940.1
exon
part_ofPaHa04g00940.1-exon-4-1787993825:3252246..3252557mRNAPaHa04g00940.1
