Feature identity
- Identifier
- PaHa04g02580.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,425 bp
- Genomic location
- 4:5,785,092–5,787,838
- Strand
- −
Hass · mRNA
PaHa04g02580.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,425
- bp
- 4:5,785,092–5,787,838
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g02580
- eggNOG
- Preferred name: LOC104603172 | Seed ortholog: 337451.A0A3S3NAK0 | COG: S | eggNOG OG: AP2@131567|Eo-12, AP2@3193|Apr-24, AP2@33090|Xs-18, AP2@3398|CFq-27, AP2@58023|BJE-25
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009791 post-embryonic development; GO:0009845 seed germination; GO:0010311 lateral root formation; GO:0040019 positive regulation of embryonic development; GO:0048364 root development; GO:0060771 phyllotactic patterning; GO:0060772 leaf phyllotactic patterning; GO:1905392 plant organ morphogenesis; GO:1990110 callus formation
- KEGG
- KO: K09285 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g02580.1-protein
derives_frommRNAPaHa04g02580.1
mRNAPaHa04g02580.1
part_ofgenePaHa04g02580
CDS
part_ofPaHa04g02580.1-CDS-4-1787993825:5785092..5785723mRNAPaHa04g02580.1
CDS
part_ofPaHa04g02580.1-CDS-4-1787993825:5786301..5786377mRNAPaHa04g02580.1
CDS
part_ofPaHa04g02580.1-CDS-4-1787993825:5786479..5786529mRNAPaHa04g02580.1
CDS
part_ofPaHa04g02580.1-CDS-4-1787993825:5786625..5786698mRNAPaHa04g02580.1
CDS
part_ofPaHa04g02580.1-CDS-4-1787993825:5786799..5786887mRNAPaHa04g02580.1
CDS
part_ofPaHa04g02580.1-CDS-4-1787993825:5786995..5787003mRNAPaHa04g02580.1
CDS
part_ofPaHa04g02580.1-CDS-4-1787993825:5787155..5787237mRNAPaHa04g02580.1
CDS
part_ofPaHa04g02580.1-CDS-4-1787993825:5787313..5787619mRNAPaHa04g02580.1
CDS
part_ofPaHa04g02580.1-CDS-4-1787993825:5787736..5787838mRNAPaHa04g02580.1
exon
part_ofPaHa04g02580.1-exon-4-1787993825:5785092..5785723mRNAPaHa04g02580.1
exon
part_ofPaHa04g02580.1-exon-4-1787993825:5786301..5786377mRNAPaHa04g02580.1
exon
part_ofPaHa04g02580.1-exon-4-1787993825:5786479..5786529mRNAPaHa04g02580.1
exon
part_ofPaHa04g02580.1-exon-4-1787993825:5786625..5786698mRNAPaHa04g02580.1
exon
part_ofPaHa04g02580.1-exon-4-1787993825:5786799..5786887mRNAPaHa04g02580.1
exon
part_ofPaHa04g02580.1-exon-4-1787993825:5786995..5787003mRNAPaHa04g02580.1
exon
part_ofPaHa04g02580.1-exon-4-1787993825:5787155..5787237mRNAPaHa04g02580.1
exon
part_ofPaHa04g02580.1-exon-4-1787993825:5787313..5787619mRNAPaHa04g02580.1
exon
part_ofPaHa04g02580.1-exon-4-1787993825:5787736..5787838mRNAPaHa04g02580.1
