Feature identity
- Identifier
- PaHa04g21870.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 897 bp
- Genomic location
- 4:55,676,154–55,696,782
- Strand
- +
Hass · mRNA
PaHa04g21870.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 897
- bp
- 4:55,676,154–55,696,782
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g21870
- eggNOG
- Preferred name: SVP | Seed ortholog: 4432.A0A1U7ZMM0 | COG: S | eggNOG OG: K-box@131567|A-1*, K-box@2759|F-3, K-box@3398|ZT-16, K-box@35493|M-4, SRF-TF@131567|A-1*, SRF-TF@2759|C-2!, SRF-TF@3398|BZM-27
- Gene Ontology
- GO:0000900 mRNA regulatory element binding translation repressor activity; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009266 response to temperature stimulus; GO:0009910 negative regulation of flower development; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription
- KEGG
- KO: K04378, K04454, K09260, K09261, K09262, K09264, K09265, K12412, K19807, K19808, K27808 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000, 03021, 04131
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g21870.1-protein
derives_frommRNAPaHa04g21870.1
mRNAPaHa04g21870.1
part_ofgenePaHa04g21870
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55676154..55676218mRNAPaHa04g21870.1
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55678467..55678560mRNAPaHa04g21870.1
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55678850..55679064mRNAPaHa04g21870.1
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55683475..55683553mRNAPaHa04g21870.1
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55685382..55685443mRNAPaHa04g21870.1
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55685532..55685631mRNAPaHa04g21870.1
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55685715..55685756mRNAPaHa04g21870.1
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55686611..55686652mRNAPaHa04g21870.1
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55686745..55686899mRNAPaHa04g21870.1
CDS
part_ofPaHa04g21870.1-CDS-4-1787993825:55696740..55696782mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55676154..55676218mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55678467..55678560mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55678850..55679064mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55683475..55683553mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55685382..55685443mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55685532..55685631mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55685715..55685756mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55686611..55686652mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55686745..55686899mRNAPaHa04g21870.1
exon
part_ofPaHa04g21870.1-exon-4-1787993825:55696740..55696782mRNAPaHa04g21870.1
