Hass · mRNA

PaHa02g12080.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,552
bp
2:19,924,550–19,959,269
genomic location
Record overview

Feature identity

Identifier
PaHa02g12080.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,552 bp
Genomic location
2:19,924,550–19,959,269
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: SEC | Seed ortholog: 337451.A0A3S3MQ47 | COG: COG4783 | eggNOG OG: TPR_16@131567|oH-17
Gene Ontology
GO:0000038 very long-chain fatty acid metabolic process; GO:0000268 peroxisome signal sequence receptor activity; GO:0000425 pexophagy; GO:0001764 neuron migration; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005777 peroxisome; GO:0005778 peroxisomal membrane; GO:0005782 peroxisomal matrix; GO:0005794 Golgi apparatus; GO:0005829 cytosol; GO:0006513 protein monoubiquitination; GO:0006625 protein targeting to peroxisome; GO:0006629 lipid metabolic process; GO:0006631 fatty acid metabolic process; GO:0006635 fatty acid beta-oxidation; GO:0007005 mitochondrion organization; GO:0007006 mitochondrial membrane organization; GO:0007029 endoplasmic reticulum organization; GO:0007031 peroxisome organization; GO:0008150 biological_process; GO:0009536 plastid; GO:0009733 response to auxin; GO:0016020 membrane; GO:0016558 protein import into peroxisome matrix; GO:0016560 protein import into peroxisome matrix, docking; GO:0016561 protein import into peroxisome matrix, translocation; GO:0016562 protein import into peroxisome matrix, receptor recycling; GO:0019899 enzyme binding; GO:0020015 glycosome; GO:0021795 cerebral cortex cell migration; GO:0021895 cerebral cortex neuron differentiation; GO:0031267 small GTPase binding; GO:0031333 negative regulation of protein-containing complex assembly; GO:0032991 protein-containing complex; GO:0034614 cellular response to reactive oxygen species; GO:0040018 positive regulation of multicellular organism growth; GO:0043335 protein unfolding; GO:0044721 protein import into peroxisome matrix, substrate release; GO:0045046 protein import into peroxisome membrane; GO:0048468 cell development; GO:0050905 neuromuscular process; GO:0051262 protein tetramerization; GO:0072347 response to anesthetic; GO:0140597 protein carrier activity
KEGG
KO: K12600 | Pathway: 03018 | BRITE: 00001, 03019
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa02g12080.1-CDS-2-1787993825:19924550..19924737
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19924834..19925031
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19930231..19930877
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19931894..19932136
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19935430..19935524
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19935633..19936006
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19938276..19938327
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19938515..19938727
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19940615..19940680
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19941794..19941851
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19941968..19942083
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19942148..19942319
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19942396..19942640
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19943742..19943822
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19943903..19944043
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19956424..19956516
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19957076..19957126
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19957223..19957306
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19957577..19957699
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19958469..19958681
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19959073..19959159
part_of
CDSPaHa02g12080.1-CDS-2-1787993825:19959258..19959269
part_of
exonPaHa02g12080.1-exon-2-1787993825:19924550..19924737
part_of
exonPaHa02g12080.1-exon-2-1787993825:19924834..19925031
part_of
exonPaHa02g12080.1-exon-2-1787993825:19930231..19930877
part_of
exonPaHa02g12080.1-exon-2-1787993825:19931894..19932136
part_of
exonPaHa02g12080.1-exon-2-1787993825:19935430..19935524
part_of
exonPaHa02g12080.1-exon-2-1787993825:19935633..19936006
part_of
exonPaHa02g12080.1-exon-2-1787993825:19938276..19938327
part_of
exonPaHa02g12080.1-exon-2-1787993825:19938515..19938727
part_of
exonPaHa02g12080.1-exon-2-1787993825:19940615..19940680
part_of
exonPaHa02g12080.1-exon-2-1787993825:19941794..19941851
part_of
exonPaHa02g12080.1-exon-2-1787993825:19941968..19942083
part_of
exonPaHa02g12080.1-exon-2-1787993825:19942148..19942319
part_of
exonPaHa02g12080.1-exon-2-1787993825:19942396..19942640
part_of
exonPaHa02g12080.1-exon-2-1787993825:19943742..19943822
part_of
exonPaHa02g12080.1-exon-2-1787993825:19943903..19944043
part_of
exonPaHa02g12080.1-exon-2-1787993825:19956424..19956516
part_of
exonPaHa02g12080.1-exon-2-1787993825:19957076..19957126
part_of
exonPaHa02g12080.1-exon-2-1787993825:19957223..19957306
part_of
exonPaHa02g12080.1-exon-2-1787993825:19957577..19957699
part_of
exonPaHa02g12080.1-exon-2-1787993825:19958469..19958681
part_of
exonPaHa02g12080.1-exon-2-1787993825:19959073..19959159
part_of
exonPaHa02g12080.1-exon-2-1787993825:19959258..19959269
part_of