Feature identity
- Identifier
- PaHa05g08370.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,551 bp
- Genomic location
- 5:17,566,724–17,574,870
- Strand
- −
Hass · mRNA
PaHa05g08370.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,551
- bp
- 5:17,566,724–17,574,870
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g08370
- eggNOG
- Preferred name: LOC104592198 | Seed ortholog: 337451.A0A3S3N7X7 | COG: COG5635 | eggNOG OG: NB-ARC@131567|AC-6, NB-ARC@3398|Dli-32, NB-ARC@35493|Ary-24, NB-ARC@58023|BfR-27
- Gene Ontology
- GO:0000139 Golgi membrane; GO:0000166 nucleotide binding; GO:0000325 plant-type vacuole; GO:0002229 defense response to oomycetes; GO:0002239 response to oomycetes; GO:0002758 innate immune response-activating signaling pathway; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006952 defense response; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009416 response to light stimulus; GO:0009506 plasmodesma; GO:0009507 chloroplast; GO:0009615 response to virus; GO:0009626 plant-type hypersensitive response; GO:0009733 response to auxin; GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0009941 chloroplast envelope; GO:0010082 regulation of root meristem growth; GO:0010114 response to red light; GO:0010193 response to ozone; GO:0012505 endomembrane system; GO:0016020 membrane; GO:0016301 kinase activity; GO:0030275 LRR domain binding; GO:0034052 positive regulation of plant-type hypersensitive response; GO:0034644 cellular response to UV; GO:0042742 defense response to bacterium; GO:0042802 identical protein binding; GO:0045088 regulation of innate immune response; GO:0046713 borate transport; GO:0048046 apoplast; GO:0050832 defense response to fungus; GO:0051607 defense response to virus; GO:0051707 response to other organism; GO:0071456 cellular response to hypoxia; GO:0140376 innate immune receptor activity; GO:2000071 regulation of defense response by callose deposition
- KEGG
- EC: ec:3.1.3.16 | KO: K13457 | Pathway: 04626 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g08370.1-protein
derives_frommRNAPaHa05g08370.1
mRNAPaHa05g08370.1
part_ofgenePaHa05g08370
CDS
part_ofPaHa05g08370.1-CDS-5-1787993825:17566724..17566763mRNAPaHa05g08370.1
CDS
part_ofPaHa05g08370.1-CDS-5-1787993825:17567420..17567555mRNAPaHa05g08370.1
CDS
part_ofPaHa05g08370.1-CDS-5-1787993825:17567646..17567994mRNAPaHa05g08370.1
CDS
part_ofPaHa05g08370.1-CDS-5-1787993825:17568997..17569230mRNAPaHa05g08370.1
CDS
part_ofPaHa05g08370.1-CDS-5-1787993825:17569484..17569741mRNAPaHa05g08370.1
CDS
part_ofPaHa05g08370.1-CDS-5-1787993825:17569820..17569963mRNAPaHa05g08370.1
CDS
part_ofPaHa05g08370.1-CDS-5-1787993825:17574481..17574870mRNAPaHa05g08370.1
exon
part_ofPaHa05g08370.1-exon-5-1787993825:17566724..17566763mRNAPaHa05g08370.1
exon
part_ofPaHa05g08370.1-exon-5-1787993825:17567420..17567555mRNAPaHa05g08370.1
exon
part_ofPaHa05g08370.1-exon-5-1787993825:17567646..17567994mRNAPaHa05g08370.1
exon
part_ofPaHa05g08370.1-exon-5-1787993825:17568997..17569230mRNAPaHa05g08370.1
exon
part_ofPaHa05g08370.1-exon-5-1787993825:17569484..17569741mRNAPaHa05g08370.1
exon
part_ofPaHa05g08370.1-exon-5-1787993825:17569820..17569963mRNAPaHa05g08370.1
exon
part_ofPaHa05g08370.1-exon-5-1787993825:17574481..17574870mRNAPaHa05g08370.1
