West Indian T2T · gene

Pa01g0653

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,962
bp
Pa01:8,461,873–8,465,834
genomic location
Record overview

Feature identity

Identifier
Pa01g0653
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
3,962 bp
Genomic location
Pa01:8,461,873–8,465,834
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC105851982, LOC107807908 | Seed ortholog: 33114.A0A2G2X831, 4232.A0A251V331 | COG: S | eggNOG OG: RVT_2@131567|pM-20, Rcd1@1437183|Tv-23, Rcd1@2759|A-1, Rcd1@35493|Ft-15, Rcd1@4071|ADP-44, Rcd1@71274|jT-30, Retrotran_gag_2@131567|nJ-25, Retrotran_gag_2@1437183|Bfa-34, Retrotran_gag_2@3193|AFZ-28, Retrotran_gag_2@3398|Axg-32, gag_pre-integrs@131567|C-2, gag_pre-integrs@1437183|Tz-13, gag_pre-integrs@2759|b-5, gag_pre-integrs@3193|Aq-7, rve@131567|G-3!, rve@1437183|Etq-26, rve@2759|Zt-14
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening; GO:0000932 P-body; GO:0002679 respiratory burst involved in defense response; GO:0003674 molecular_function; GO:0003713 transcription coactivator activity; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0004842 ubiquitin-protein transferase activity; GO:0005154 epidermal growth factor receptor binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006352 DNA-templated transcription initiation; GO:0006354 DNA-templated transcription elongation; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006402 mRNA catabolic process; GO:0006952 defense response; GO:0007283 spermatogenesis; GO:0007548 sex differentiation; GO:0008150 biological_process; GO:0009414 response to water deprivation; GO:0016567 protein ubiquitination; GO:0017148 negative regulation of translation; GO:0019221 cytokine-mediated signaling pathway; GO:0019900 kinase binding; GO:0019904 protein domain specific binding; GO:0030014 CCR4-NOT complex; GO:0030015 CCR4-NOT core complex; GO:0030154 cell differentiation; GO:0031137 regulation of conjugation with cellular fusion; GO:0031142 induction of conjugation upon nitrogen starvation; GO:0031581 hemidesmosome assembly; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0032991 protein-containing complex; GO:0033138 positive regulation of peptidyl-serine phosphorylation; GO:0033147 negative regulation of intracellular estrogen receptor signaling pathway; GO:0033620 Mei2 nuclear dot complex; GO:0042803 protein homodimerization activity; GO:0045742 positive regulation of epidermal growth factor receptor signaling pathway; GO:0051865 protein autoubiquitination
KEGG
EC: ec:1.10.3.2 | KO: K05909, K12606 | Pathway: 03018 | BRITE: 00001, 01000, 03019
Biological context

Connected feature records

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