West Indian T2T · gene

Pa01g1746

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

6,414
bp
Pa01:26,055,917–26,062,330
genomic location
Record overview

Feature identity

Identifier
Pa01g1746
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
6,414 bp
Genomic location
Pa01:26,055,917–26,062,330
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107822814 | Seed ortholog: 337451.A0A443N8D0 | COG: S | eggNOG OG: CFA20_dom@131567|A-1*, CFA20_dom@2759|K-6
Gene Ontology
GO:0000126 transcription factor TFIIIB complex; GO:0000398 mRNA splicing, via spliceosome; GO:0001895 retina homeostasis; GO:0003674 molecular_function; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005814 centriole; GO:0005875 microtubule associated complex; GO:0005879 axonemal microtubule; GO:0005929 cilium; GO:0005930 axoneme; GO:0006366 transcription by RNA polymerase II; GO:0007288 sperm axoneme assembly; GO:0007291 sperm individualization; GO:0010608 post-transcriptional regulation of gene expression; GO:0018094 protein polyglycylation; GO:0018095 protein polyglutamylation; GO:0030317 flagellated sperm motility; GO:0031514 motile cilium; GO:0035082 axoneme assembly; GO:0036064 ciliary basal body; GO:0036126 sperm flagellum; GO:0040011 locomotion; GO:0044782 cilium organization; GO:0048570 notochord morphogenesis; GO:0060271 cilium assembly; GO:0060296 regulation of cilium beat frequency involved in ciliary motility; GO:0061371 determination of heart left/right asymmetry; GO:0070062 extracellular exosome; GO:0071011 precatalytic spliceosome; GO:0071013 catalytic step 2 spliceosome; GO:0072594 establishment of protein localization to organelle; GO:0097228 sperm principal piece; GO:0097540 axonemal central pair; GO:0097545 axonemal doublet microtubule; GO:0160112 axonemal B tubule inner sheath; GO:1902093 positive regulation of flagellated sperm motility; GO:2000147 positive regulation of cell motility; GO:2000155 positive regulation of cilium-dependent cell motility; GO:2000253 positive regulation of feeding behavior
KEGG
KO: K25470 | BRITE: 00001, 03037
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.