West Indian T2T · gene

Pa01g1947

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,489
bp
Pa01:29,995,615–29,998,103
genomic location
Record overview

Feature identity

Identifier
Pa01g1947
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
2,489 bp
Genomic location
Pa01:29,995,615–29,998,103
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104589361 | Seed ortholog: 337451.A0A443NN26 | COG: S | eggNOG OG: PBD@131567|A-1*, PBD@2759|wA-21, PBD@3398|Efa-57
Gene Ontology
GO:0000011 vacuole inheritance; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000131 incipient cellular bud site; GO:0000165 MAPK cascade; GO:0000282 cellular bud site selection; GO:0000749 response to pheromone triggering conjugation with cellular fusion; GO:0001402 signal transduction involved in filamentous growth; GO:0001403 invasive growth in response to glucose limitation; GO:0001410 chlamydospore formation; GO:0001568 blood vessel development; GO:0001654 eye development; GO:0001666 response to hypoxia; GO:0001726 ruffle; GO:0001755 neural crest cell migration; GO:0001947 heart looping; GO:0002119 nematode larval development; GO:0002223 stimulatory C-type lectin receptor signaling pathway; GO:0002572 pro-T cell differentiation; GO:0003232 bulbus arteriosus development; GO:0003300 cardiac muscle hypertrophy; GO:0003729 mRNA binding; GO:0004672 protein kinase activity; GO:0004674 protein serine/threonine kinase activity; GO:0004708 MAP kinase kinase activity; GO:0004709 MAP kinase kinase kinase activity; GO:0005515 protein binding; GO:0005518 collagen binding; GO:0005525 GTP binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005737 cytoplasm; GO:0005768 endosome; GO:0005829 cytosol; GO:0005856 cytoskeleton; GO:0005876 spindle microtubule; GO:0005884 actin filament; GO:0005886 plasma membrane; GO:0005911 cell-cell junction; GO:0005925 focal adhesion; GO:0006338 chromatin remodeling; GO:0006468 protein phosphorylation; GO:0006974 DNA damage response; GO:0007096 regulation of exit from mitosis; GO:0007118 budding cell apical bud growth; GO:0007121 bipolar cellular bud site selection; GO:0007124 pseudohyphal growth; GO:0007155 cell adhesion; GO:0007165 signal transduction; GO:0007232 osmosensory signaling pathway via Sho1 osmosensor; GO:0007264 small GTPase-mediated signal transduction; GO:0007391 dorsal closure; GO:0007395 dorsal closure, spreading of leading edge cells; GO:0007406 negative regulation of neuroblast proliferation; GO:0007409 axonogenesis; GO:0007411 axon guidance; GO:0007420 brain development; GO:0007507 heart development; GO:0007528 neuromuscular junction development; GO:0008045 motor neuron axon guidance; GO:0008284 positive regulation of cell population proliferation; GO:0008349 MAP kinase kinase kinase kinase activity; GO:0009267 cellular response to starvation; GO:0010172 embryonic body morphogenesis; GO:0010468 regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0010763 positive regulation of fibroblast migration; GO:0010975 regulation of neuron projection development; GO:0014069 postsynaptic density; GO:0014704 intercalated disc; GO:0016020 membrane; GO:0016328 lateral plasma membrane; GO:0016358 dendrite development; GO:0016477 cell migration; GO:0016607 nuclear speck; GO:0017124 SH3 domain binding; GO:0019226 transmission of nerve impulse; GO:0019901 protein kinase binding; GO:0019991 septate junction assembly; GO:0021549 cerebellum development; GO:0021764 amygdala development; GO:0021990 neural plate formation; GO:0030010 establishment of cell polarity; GO:0030018 Z disc; GO:0030027 lamellipodium; GO:0030036 actin cytoskeleton organization; GO:0030056 hemidesmosome; GO:0030141 secretory granule; GO:0030296 protein tyrosine kinase activator activity; GO:0030335 positive regulation of cell migration; GO:0030424 axon; GO:0030425 dendrite; GO:0030426 growth cone; GO:0030447 filamentous growth; GO:0030833 regulation of actin filament polymerization; GO:0031252 cell leading edge; GO:0031267 small GTPase binding; GO:0031505 fungal-type cell wall organization; GO:0031581 hemidesmosome assembly; GO:0031594 neuromuscular junction; GO:0031965 nuclear membrane; GO:0032153 cell division site; GO:0032869 cellular response to insulin stimulus; GO:0032956 regulation of actin cytoskeleton organization; GO:0032991 protein-containing complex; GO:0033138 positive regulation of peptidyl-serine phosphorylation; GO:0033148 positive regulation of intracellular estrogen receptor signaling pathway; GO:0034063 cytoplasmic stress granule assembly; GO:0034333 adherens junction assembly; GO:0035262 gonad morphogenesis; GO:0035376 sterol import; GO:0035556 intracellular signal transduction; GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation; GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis; GO:0040039 inductive cell migration; GO:0042060 wound healing; GO:0042802 identical protein binding; GO:0043015 gamma-tubulin binding; GO:0043025 neuronal cell body; GO:0043065 positive regulation of apoptotic process; GO:0043066 negative regulation of apoptotic process; GO:0043067 regulation of programmed cell death; GO:0043113 receptor clustering; GO:0043204 perikaryon; GO:0043332 mating projection tip; GO:0043408 regulation of MAPK cascade; GO:0043525 positive regulation of neuron apoptotic process; GO:0044025 histone H2BS14 kinase activity; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0045296 cadherin binding; GO:0045666 positive regulation of neuron differentiation; GO:0045773 positive regulation of axon extension; GO:0045807 positive regulation of endocytosis; GO:0045887 positive regulation of synaptic assembly at neuromuscular junction; GO:0046628 positive regulation of insulin receptor signaling pathway; GO:0046777 protein autophosphorylation; GO:0048010 vascular endothelial growth factor receptor signaling pathway; GO:0048012 hepatocyte growth factor receptor signaling pathway; GO:0048013 ephrin receptor signaling pathway; GO:0048598 embryonic morphogenesis; GO:0048703 embryonic viscerocranium morphogenesis; GO:0048754 branching morphogenesis of an epithelial tube; GO:0048812 neuron projection morphogenesis; GO:0050770 regulation of axonogenesis; GO:0050803 regulation of synapse structure or activity; GO:0051020 GTPase binding; GO:0051285 cell cortex of cell tip; GO:0051286 cell tip; GO:0051493 regulation of cytoskeleton organization; GO:0051496 positive regulation of stress fiber assembly; GO:0051497 negative regulation of stress fiber assembly; GO:0051604 protein maturation; GO:0051726 regulation of cell cycle; GO:0060026 convergent extension; GO:0060244 negative regulation of cell proliferation involved in contact inhibition; GO:0060996 dendritic spine development; GO:0060997 dendritic spine morphogenesis; GO:0061003 positive regulation of dendritic spine morphogenesis; GO:0061052 negative regulation of cell growth involved in cardiac muscle cell development; GO:0061173 positive regulation of establishment of bipolar cell polarity; GO:0061361 positive regulation of maintenance of bipolar cell polarity regulating cell shape; GO:0061534 gamma-aminobutyric acid secretion, neurotransmission; GO:0061535 glutamate secretion, neurotransmission; GO:0062038 positive regulation of pheromone response MAPK cascade; GO:0070301 cellular response to hydrogen peroxide; GO:0070507 regulation of microtubule cytoskeleton organization; GO:0070830 bicellular tight junction assembly; GO:0071470 cellular response to osmotic stress; GO:0071521 Cdc42 GTPase complex; GO:0071560 cellular response to transforming growth factor beta stimulus; GO:0071570 cement gland development; GO:0090017 anterior neural plate formation; GO:0090063 positive regulation of microtubule nucleation; GO:0090128 regulation of synapse maturation; GO:0090314 positive regulation of protein targeting to membrane; GO:0097194 execution phase of apoptosis; GO:0097482 muscle cell postsynaptic specialization; GO:0098597 observational learning; GO:0098696 regulation of neurotransmitter receptor localization to postsynaptic specialization membrane; GO:0098794 postsynapse; GO:0098978 glutamatergic synapse; GO:0098982 GABA-ergic synapse; GO:0099175 regulation of postsynapse organization; GO:0106310 protein serine kinase activity; GO:0110085 mitotic actomyosin contractile ring; GO:0120105 mitotic actomyosin contractile ring, intermediate layer; GO:0150036 regulation of trans-synaptic signaling by endocannabinoid, modulating synaptic transmission; GO:0150105 protein localization to cell-cell junction; GO:1900119 positive regulation of execution phase of apoptosis; GO:1900271 regulation of long-term synaptic potentiation; GO:1900436 positive regulation of filamentous growth of a population of unicellular organisms in response to starvation; GO:1903472 negative regulation of mitotic actomyosin contractile ring contraction; GO:1903500 negative regulation of mitotic actomyosin contractile ring assembly; GO:1903608 protein localization to cytoplasmic stress granule; GO:1903617 positive regulation of mitotic cytokinesis, division site positioning; GO:1904707 positive regulation of vascular associated smooth muscle cell proliferation; GO:1904754 positive regulation of vascular associated smooth muscle cell migration; GO:1990277 parasexual reproduction with cellular fusion; GO:2000247 positive regulation of establishment or maintenance of bipolar cell polarity regulating cell shape; GO:2000573 positive regulation of DNA biosynthetic process; GO:2000910 negative regulation of sterol import; GO:2001238 positive regulation of extrinsic apoptotic signaling pathway
KEGG
EC: ec:2.7.11.1 | KO: K04409, K04410, K05733 | Pathway: 04010, 04011, 04012, 04014, 04024, 04062, 04360, 04392, 04510, 04625, 04650, 04660, 04666, 04810, 05132, 05170, 05205, 05211 | BRITE: 00001, 01000, 01001, 03036, 04131
Biological context

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