West Indian T2T · gene

Pa01g2769

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

50,439
bp
Pa01:70,648,075–70,698,513
genomic location
Record overview

Feature identity

Identifier
Pa01g2769
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
50,439 bp
Genomic location
Pa01:70,648,075–70,698,513
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: UBP8 | Seed ortholog: 337451.A0A3S3Q6P0 | COG: S | eggNOG OG: UCH@131567|Hh-17, UCH@2759|AiQ-26, UCH@3398|KtA-42
Gene Ontology
GO:0000244 spliceosomal tri-snRNP complex assembly; GO:0001222 transcription corepressor binding; GO:0002181 cytoplasmic translation; GO:0003674 molecular_function; GO:0004197 cysteine-type endopeptidase activity; GO:0004843 cysteine-type deubiquitinase activity; GO:0005160 transforming growth factor beta receptor binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0006974 DNA damage response; GO:0007179 transforming growth factor beta receptor signaling pathway; GO:0008150 biological_process; GO:0009267 cellular response to starvation; GO:0010637 negative regulation of mitochondrial fusion; GO:0016579 protein deubiquitination; GO:0030509 BMP signaling pathway; GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway; GO:0031397 negative regulation of protein ubiquitination; GO:0031647 regulation of protein stability; GO:0031669 cellular response to nutrient levels; GO:0031685 adenosine receptor binding; GO:0034122 negative regulation of toll-like receptor signaling pathway; GO:0034394 protein localization to cell surface; GO:0035520 monoubiquitinated protein deubiquitination; GO:0038202 TORC1 signaling; GO:0042802 identical protein binding; GO:0043123 positive regulation of canonical NF-kappaB signal transduction; GO:0045947 negative regulation of translational initiation; GO:0045948 positive regulation of translational initiation; GO:0046332 SMAD binding; GO:0051252 regulation of RNA metabolic process; GO:0061649 ubiquitin-modified histone reader activity; GO:0101005 deubiquitinase activity; GO:0140492 metal-dependent deubiquitinase activity; GO:0140673 transcription elongation-coupled chromatin remodeling; GO:1900246 positive regulation of RIG-I signaling pathway; GO:1902238 regulation of intrinsic apoptotic signaling pathway in response to osmotic stress by p53 class mediator; GO:1904262 negative regulation of TORC1 signaling; GO:1904263 positive regulation of TORC1 signaling; GO:1905035 negative regulation of antifungal innate immune response; GO:1990167 protein K27-linked deubiquitination; GO:1990380 K48-linked deubiquitinase activity
KEGG
EC: ec:3.4.19.12 | KO: K21343 | Pathway: 03083, 04137 | BRITE: 00001, 01000, 01002, 04121, 04131
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.