West Indian T2T · gene

Pa01g3173

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,959
bp
Pa01:78,435,865–78,437,823
genomic location
Record overview

Feature identity

Identifier
Pa01g3173
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,959 bp
Genomic location
Pa01:78,435,865–78,437,823
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104610464 | Seed ortholog: 337451.A0A3S3NJ10 | COG: S | eggNOG OG: HALZ@131567|y-8, HALZ@3193|Bd-11, HALZ@3398|Ll-16, HALZ@35493|Au-10, HD-ZIP_N@131567|A-1*, HD-ZIP_N@3193|d-9!, Homeodomain@131221|HaM-32, Homeodomain@131567|XU-17, Homeodomain@2759|ACU-20!, Homeodomain@3193|Tih-40, Homeodomain@3398|fHj-46, Homeodomain@35493|BwP-25
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0003006 developmental process involved in reproduction; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009641 shade avoidance; GO:0009733 response to auxin; GO:0009734 auxin-activated signaling pathway; GO:0009735 response to cytokinin; GO:0009826 unidimensional cell growth; GO:0010016 shoot system morphogenesis; GO:0010017 red or far-red light signaling pathway; GO:0010218 response to far red light; GO:0010311 lateral root formation; GO:0010582 floral meristem determinacy; GO:0042803 protein homodimerization activity; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0048364 root development; GO:0048467 gynoecium development; GO:0080127 fruit septum development; GO:0080191 secondary thickening
KEGG
KO: K09338 | Pathway: 04113, 04148, 04927, 04934, 05202 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.