West Indian T2T · gene

Pa01g3279

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

24,206
bp
Pa01:80,297,020–80,321,225
genomic location
Record overview

Feature identity

Identifier
Pa01g3279
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
24,206 bp
Genomic location
Pa01:80,297,020–80,321,225
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC109010052 | Seed ortholog: 337451.A0A443NQB0 | COG: COG0464 | eggNOG OG: AAA@131567|Afu-19, AAA@2759|Lrp-32, AAA_lid_3@131567|v-6, AAA_lid_3@2759|hh-18
Gene Ontology
GO:0000070 mitotic sister chromatid segregation; GO:0000226 microtubule cytoskeleton organization; GO:0000228 nuclear chromosome; GO:0000281 mitotic cytokinesis; GO:0000287 magnesium ion binding; GO:0000785 chromatin; GO:0000922 spindle pole; GO:0001578 microtubule bundle formation; GO:0001649 osteoblast differentiation; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005634 nucleus; GO:0005640 nuclear outer membrane; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005737 cytoplasm; GO:0005741 mitochondrial outer membrane; GO:0005768 endosome; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005811 lipid droplet; GO:0005813 centrosome; GO:0005819 spindle; GO:0005829 cytosol; GO:0005856 cytoskeleton; GO:0005874 microtubule; GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0006998 nuclear envelope organization; GO:0007019 microtubule depolymerization; GO:0007026 negative regulation of microtubule depolymerization; GO:0007029 endoplasmic reticulum organization; GO:0007032 endosome organization; GO:0007084 mitotic nuclear membrane reassembly; GO:0007140 male meiotic nuclear division; GO:0007409 axonogenesis; GO:0007411 axon guidance; GO:0007626 locomotory behavior; GO:0008017 microtubule binding; GO:0008021 synaptic vesicle; GO:0008089 anterograde axonal transport; GO:0008568 microtubule severing ATPase activity; GO:0009611 response to wounding; GO:0010458 exit from mitosis; GO:0010569 regulation of double-strand break repair via homologous recombination; GO:0015630 microtubule cytoskeleton; GO:0015631 tubulin binding; GO:0016020 membrane; GO:0016787 hydrolase activity; GO:0016887 ATP hydrolysis activity; GO:0019896 axonal transport of mitochondrion; GO:0021955 central nervous system neuron axonogenesis; GO:0030424 axon; GO:0030496 midbody; GO:0030674 protein-macromolecule adaptor activity; GO:0031114 regulation of microtubule depolymerization; GO:0031117 positive regulation of microtubule depolymerization; GO:0031122 cytoplasmic microtubule organization; GO:0031410 cytoplasmic vesicle; GO:0031468 nuclear membrane reassembly; GO:0031594 neuromuscular junction; GO:0031965 nuclear membrane; GO:0032467 positive regulation of cytokinesis; GO:0032506 cytokinetic process; GO:0032991 protein-containing complex; GO:0033687 osteoblast proliferation; GO:0034214 protein hexamerization; GO:0034389 lipid droplet organization; GO:0035099 hemocyte migration; GO:0035825 homologous recombination; GO:0036269 swimming behavior; GO:0036297 interstrand cross-link repair; GO:0040025 vulval development; GO:0042802 identical protein binding; GO:0043014 alpha-tubulin binding; GO:0043066 negative regulation of apoptotic process; GO:0043195 terminal bouton; GO:0044877 protein-containing complex binding; GO:0045128 negative regulation of reciprocal meiotic recombination; GO:0045773 positive regulation of axon extension; GO:0045834 positive regulation of lipid metabolic process; GO:0045886 negative regulation of synaptic assembly at neuromuscular junction; GO:0045887 positive regulation of synaptic assembly at neuromuscular junction; GO:0045931 positive regulation of mitotic cell cycle; GO:0046034 ATP metabolic process; GO:0048471 perinuclear region of cytoplasm; GO:0048477 oogenesis; GO:0048487 beta-tubulin binding; GO:0048675 axon extension; GO:0048691 positive regulation of axon extension involved in regeneration; GO:0048741 skeletal muscle fiber development; GO:0050775 positive regulation of dendrite morphogenesis; GO:0051013 microtubule severing; GO:0051228 mitotic spindle disassembly; GO:0051233 spindle midzone; GO:0051260 protein homooligomerization; GO:0051647 nucleus localization; GO:0051726 regulation of cell cycle; GO:0061640 cytoskeleton-dependent cytokinesis; GO:0070062 extracellular exosome; GO:0071479 cellular response to ionizing radiation; GO:0071782 endoplasmic reticulum tubular network; GO:0072593 reactive oxygen species metabolic process; GO:0090148 membrane fission; GO:0097431 mitotic spindle pole; GO:0140776 protein-containing complex destabilizing activity; GO:1900074 negative regulation of neuromuscular synaptic transmission; GO:1900075 positive regulation of neuromuscular synaptic transmission; GO:1902667 regulation of axon guidance; GO:1990391 DNA repair complex; GO:1990918 double-strand break repair involved in meiotic recombination; GO:1990986 DNA recombinase disassembly; GO:2000042 negative regulation of double-strand break repair via homologous recombination; GO:2000331 regulation of terminal button organization; GO:2001243 negative regulation of intrinsic apoptotic signaling pathway
KEGG
EC: ec:5.6.1.1 | KO: K13254 | BRITE: 00001, 01000, 04131, 04812
Biological context

Connected feature records

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