Feature identity
- Identifier
- Pa01g4288
- Feature type
- gene
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 9,727 bp
- Genomic location
- Pa01:94,066,787–94,076,513
- Strand
- −
West Indian T2T · gene
Pa01g4288
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 9,727
- bp
- Pa01:94,066,787–94,076,513
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: AGO5 | Seed ortholog: 337451.A0A3S3N5W9 | COG: S | eggNOG OG: ArgoL1@131221|jP-19, ArgoL1@131567|A-1*, ArgoL1@2759|C-2!, ArgoL1@35493|MZ-14, ArgoL2@131221|Ii-13, ArgoL2@131567|A-1*, ArgoL2@2759|C-2, ArgoL2@3193|LN-14, ArgoL2@35493|Cr-10, ArgoMid@131567|A-1*, ArgoMid@2759|An-8, ArgoMid@3193|Mc-15, ArgoN@131221|RT-15, ArgoN@131567|A-1*, ArgoN@2759|C-2!, ArgoN@3193|Ws-16, ArgoN@35493|Dl-11, PAZ@131221|bB-23, PAZ@131567|A-1*, PAZ@2759|o-7!, PAZ@3193|ev-24, PAZ@35493|Pq-19, Piwi@131567|A-1, Piwi@1437183|Bbw-37, Piwi@2759|GQ-14!, Piwi@3193|Adq-32, Piwi@3398|AnG-33, Piwi@35493|wP-28
- Gene Ontology
- GO:0000340 RNA 7-methylguanosine cap binding; GO:0000976 transcription cis-regulatory region binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000993 RNA polymerase II complex binding; GO:0001046 core promoter sequence-specific DNA binding; GO:0003676 nucleic acid binding; GO:0003723 RNA binding; GO:0003725 double-stranded RNA binding; GO:0003727 single-stranded RNA binding; GO:0003729 mRNA binding; GO:0003743 translation initiation factor activity; GO:0004521 RNA endonuclease activity; GO:0005515 protein binding; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0009615 response to virus; GO:0009616 RNAi-mediated antiviral immune response; GO:0016891 RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism; GO:0016892 RNA endonuclease activity producing 3'-phosphomonoesters, hydrolytic mechanism; GO:0017151 DEAD/H-box RNA helicase binding; GO:0019899 enzyme binding; GO:0019901 protein kinase binding; GO:0030544 Hsp70 protein binding; GO:0030674 protein-macromolecule adaptor activity; GO:0034584 piRNA binding; GO:0035197 siRNA binding; GO:0035198 miRNA binding; GO:0035925 mRNA 3'-UTR AU-rich region binding; GO:0051879 Hsp90 protein binding; GO:0070551 endoribonuclease activity, cleaving siRNA-paired mRNA; GO:0070883 pre-miRNA binding; GO:0090624 endoribonuclease activity, cleaving miRNA-paired mRNA; GO:0098542 defense response to other organism; GO:0098808 mRNA cap binding; GO:0140262 mRNA cap binding complex binding; GO:0140764 small RNA binding translational repressor activity; GO:1905172 RISC complex binding
- KEGG
- KO: K11593 | Pathway: 04320, 04361 | BRITE: 00001, 03019, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPa01g4288.1
part_ofgenePa01g4288
