West Indian T2T · gene

Pa02g0848

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

7,345
bp
Pa02:12,999,099–13,006,443
genomic location
Record overview

Feature identity

Identifier
Pa02g0848
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
7,345 bp
Genomic location
Pa02:12,999,099–13,006,443
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC102713219 | Seed ortholog: 337451.A0A443N1X5 | COG: S | eggNOG OG: EAF@2759|A-1, EAF@3398|CO-10
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003711 transcription elongation factor activity; GO:0003714 transcription corepressor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0006368 transcription elongation by RNA polymerase II; GO:0007507 heart development; GO:0008013 beta-catenin binding; GO:0008023 transcription elongation factor complex; GO:0008150 biological_process; GO:0014812 muscle cell migration; GO:0016604 nuclear body; GO:0016607 nuclear speck; GO:0030111 regulation of Wnt signaling pathway; GO:0030308 negative regulation of cell growth; GO:0031016 pancreas development; GO:0032783 super elongation complex; GO:0034243 regulation of transcription elongation by RNA polymerase II; GO:0034605 cellular response to heat; GO:0042060 wound healing; GO:0042074 cell migration involved in gastrulation; GO:0045171 intercellular bridge; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0060028 convergent extension involved in axis elongation; GO:0060029 convergent extension involved in organogenesis; GO:0060215 primitive hemopoiesis; GO:0060216 definitive hemopoiesis; GO:0060770 negative regulation of epithelial cell proliferation involved in prostate gland development; GO:0070016 armadillo repeat domain binding; GO:0097193 intrinsic apoptotic signaling pathway; GO:1905382 positive regulation of snRNA transcription by RNA polymerase II
KEGG
KO: K15186 | Pathway: 04144 | BRITE: 00001, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.