West Indian T2T · gene

Pa02g1101

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,977
bp
Pa02:17,450,958–17,452,934
genomic location
Record overview

Feature identity

Identifier
Pa02g1101
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,977 bp
Genomic location
Pa02:17,450,958–17,452,934
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104590092 | Seed ortholog: 337451.A0A443N2D5 | COG: S | eggNOG OG: zf-C2H2@131567|HuZ-30, zf-C2H2@2759|TXj-36
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001046 core promoter sequence-specific DNA binding; GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0001702 gastrulation with mouth forming second; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0005925 focal adhesion; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0007212 G protein-coupled dopamine receptor signaling pathway; GO:0007267 cell-cell signaling; GO:0007391 dorsal closure; GO:0007423 sensory organ development; GO:0007472 wing disc morphogenesis; GO:0007566 embryo implantation; GO:0007623 circadian rhythm; GO:0008285 negative regulation of cell population proliferation; GO:0009267 cellular response to starvation; GO:0010839 negative regulation of keratinocyte proliferation; GO:0016604 nuclear body; GO:0030282 bone mineralization; GO:0030513 positive regulation of BMP signaling pathway; GO:0031018 endocrine pancreas development; GO:0035019 somatic stem cell population maintenance; GO:0042098 T cell proliferation; GO:0042752 regulation of circadian rhythm; GO:0043065 positive regulation of apoptotic process; GO:0043249 erythrocyte maturation; GO:0043565 sequence-specific DNA binding; GO:0045647 negative regulation of erythrocyte differentiation; GO:0045672 positive regulation of osteoclast differentiation; GO:0045892 negative regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048190 wing disc dorsal/ventral pattern formation; GO:0050847 progesterone receptor signaling pathway; GO:0071387 cellular response to cortisol stimulus; GO:1902070 positive regulation of sphingolipid mediated signaling pathway; GO:1990837 sequence-specific double-stranded DNA binding; GO:1990859 cellular response to endothelin; GO:2000045 regulation of G1/S transition of mitotic cell cycle; GO:2000374 regulation of oxygen metabolic process
KEGG
KO: K09205, K09208, K09209, K09228, K13943 | Pathway: 05168 | BRITE: 00001, 03000
Biological context

Connected feature records

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