West Indian T2T · gene

Pa02g1102

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

9,438
bp
Pa02:17,475,720–17,485,157
genomic location
Record overview

Feature identity

Identifier
Pa02g1102
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
9,438 bp
Genomic location
Pa02:17,475,720–17,485,157
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC110800011 | Seed ortholog: 337451.A0A3S3M3N7 | COG: S | eggNOG OG: zf-C3HC4@131567|B-2, zf-C3HC4@2759|DT-10, zf-C3HC4@3398|ABo-20
Gene Ontology
GO:0000209 protein polyubiquitination; GO:0002862 negative regulation of inflammatory response to antigenic stimulus; GO:0003682 chromatin binding; GO:0003723 RNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006351 DNA-templated transcription; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0008270 zinc ion binding; GO:0008595 anterior/posterior axis specification, embryo; GO:0010842 retina layer formation; GO:0042802 identical protein binding; GO:0043491 phosphatidylinositol 3-kinase/protein kinase B signal transduction; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046012 positive regulation of oskar mRNA translation; GO:0046628 positive regulation of insulin receptor signaling pathway; GO:0061630 ubiquitin protein ligase activity; GO:1901223 negative regulation of non-canonical NF-kappaB signal transduction; GO:1905881 positive regulation of oogenesis; GO:1990830 cellular response to leukemia inhibitory factor
KEGG
EC: ec:2.3.2.27 | KO: K15687 | BRITE: 00001, 01000, 04121
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.