Feature identity
- Identifier
- PaHa05g17130.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,725 bp
- Genomic location
- 5:54,951,831–54,975,030
- Strand
- +
Hass · mRNA
PaHa05g17130.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,725
- bp
- 5:54,951,831–54,975,030
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g17130
- eggNOG
- Preferred name: PCF2 | Seed ortholog: 337451.A0A3S3MGE6 | COG: S | eggNOG OG: CCT@131567|A-1*, CCT@2759|I-4, CCT@35493|CW-9, GATA@131567|A-1*, GATA@2759|x-6, GATA@35493|Df-11, TCP@131221|AC-7, TCP@131567|A-1*, TCP@2759|G-3, TCP@3193|Fh-13, tify@131567|A-1*, tify@35493|AV-9
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0001216 DNA-binding transcription activator activity; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0008361 regulation of cell size; GO:0009624 response to nematode; GO:0031347 regulation of defense response; GO:0042803 protein homodimerization activity; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0048364 root development; GO:1900056 negative regulation of leaf senescence
- KEGG
- KO: K09184, K11648, K11770, K14972, K18658, K21630 | Pathway: 03082, 03250 | BRITE: 00001, 01009, 03000, 03019, 03021, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g17130.1-protein
derives_frommRNAPaHa05g17130.1
mRNAPaHa05g17130.1
part_ofgenePaHa05g17130
CDS
part_ofPaHa05g17130.1-CDS-5-1787993825:54951831..54952205mRNAPaHa05g17130.1
CDS
part_ofPaHa05g17130.1-CDS-5-1787993825:54968929..54969018mRNAPaHa05g17130.1
CDS
part_ofPaHa05g17130.1-CDS-5-1787993825:54969098..54969246mRNAPaHa05g17130.1
CDS
part_ofPaHa05g17130.1-CDS-5-1787993825:54972125..54972244mRNAPaHa05g17130.1
CDS
part_ofPaHa05g17130.1-CDS-5-1787993825:54972543..54972648mRNAPaHa05g17130.1
CDS
part_ofPaHa05g17130.1-CDS-5-1787993825:54974146..54975030mRNAPaHa05g17130.1
exon
part_ofPaHa05g17130.1-exon-5-1787993825:54951831..54952205mRNAPaHa05g17130.1
exon
part_ofPaHa05g17130.1-exon-5-1787993825:54968929..54969018mRNAPaHa05g17130.1
exon
part_ofPaHa05g17130.1-exon-5-1787993825:54969098..54969246mRNAPaHa05g17130.1
exon
part_ofPaHa05g17130.1-exon-5-1787993825:54972125..54972244mRNAPaHa05g17130.1
exon
part_ofPaHa05g17130.1-exon-5-1787993825:54972543..54972648mRNAPaHa05g17130.1
exon
part_ofPaHa05g17130.1-exon-5-1787993825:54974146..54975030mRNAPaHa05g17130.1
