West Indian T2T · gene

Pa02g1738

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,216
bp
Pa02:32,902,710–32,905,925
genomic location
Record overview

Feature identity

Identifier
Pa02g1738
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
3,216 bp
Genomic location
Pa02:32,902,710–32,905,925
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC108987854 | Seed ortholog: 29760.F6I4V8 | COG: S | eggNOG OG: FACT-Spt16_Nlob@1437183|GH-17, FACT-Spt16_Nlob@1437201|PU-22, FACT-Spt16_Nlob@2759|A-1, Peptidase_M24@131567|En-13, Peptidase_M24@1437183|EHS-33, Peptidase_M24@1437201|KKb-39, Rtt106@131567|A-1*, Rtt106@1437183|AAh-28, Rtt106@2759|c-5, SPT16@1437183|Hc-14, SPT16@1437201|Rj-19, SPT16@2759|A-1
Gene Ontology
GO:0000511 H2A-H2B histone complex chaperone activity; GO:0000785 chromatin; GO:0000791 euchromatin; GO:0001755 neural crest cell migration; GO:0003682 chromatin binding; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005703 polytene chromosome puff; GO:0005705 polytene chromosome interband; GO:0005730 nucleolus; GO:0005829 cytosol; GO:0006261 DNA-templated DNA replication; GO:0006325 chromatin organization; GO:0006334 nucleosome assembly; GO:0006335 DNA replication-dependent chromatin assembly; GO:0006337 nucleosome disassembly; GO:0006338 chromatin remodeling; GO:0006351 DNA-templated transcription; GO:0006366 transcription by RNA polymerase II; GO:0006368 transcription elongation by RNA polymerase II; GO:0007063 regulation of sister chromatid cohesion; GO:0008023 transcription elongation factor complex; GO:0008150 biological_process; GO:0014033 neural crest cell differentiation; GO:0014044 Schwann cell development; GO:0031491 nucleosome binding; GO:0032784 regulation of DNA-templated transcription elongation; GO:0032786 positive regulation of DNA-templated transcription, elongation; GO:0034728 nucleosome organization; GO:0035101 FACT complex; GO:0042393 histone binding; GO:0045787 positive regulation of cell cycle; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly; GO:0045995 regulation of embryonic development; GO:0046982 protein heterodimerization activity; GO:0048713 regulation of oligodendrocyte differentiation; GO:0051984 positive regulation of chromosome segregation; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0140673 transcription elongation-coupled chromatin remodeling; GO:0140713 histone chaperone activity; GO:0140719 constitutive heterochromatin formation; GO:0160094 nematode pharynx development; GO:0160239 transcription pausing by RNA polymerase II; GO:1902275 regulation of chromatin organization
KEGG
KO: K25639 | BRITE: 00001, 03036
Biological context

Connected feature records

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