Feature identity
- Identifier
- Pa02g2502
- Feature type
- gene
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 278 bp
- Genomic location
- Pa02:66,404,329–66,404,606
- Strand
- +
West Indian T2T · gene
Pa02g2502
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 278
- bp
- Pa02:66,404,329–66,404,606
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: ATX5 | Seed ortholog: 337451.A0A3S3NQ28 | COG: S | eggNOG OG: PHD_2@131567|A-1*, PHD_2@2759|C-2!, PHD_2@33090|DS-10, PWWP@131567|A-1*, PWWP@2759|FF-11, PWWP@33090|Tv-15, PWWP@3398|ok-18, SET@131567|AUD-18, SET@2759|Azl-20, SET@33090|DWI-26, SET@58023|JYw-34, zf-HC5HC2H_2@131567|A-1*, zf-HC5HC2H_2@2759|BX-8, zf-HC5HC2H_2@3398|ea-17
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0001046 core promoter sequence-specific DNA binding; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0003713 transcription coactivator activity; GO:0003723 RNA binding; GO:0005102 signaling receptor binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008270 zinc ion binding; GO:0008276 protein methyltransferase activity; GO:0009294 DNA-mediated transformation; GO:0009506 plasmodesma; GO:0010314 phosphatidylinositol-5-phosphate binding; GO:0010698 acetyltransferase activator activity; GO:0016279 protein-lysine N-methyltransferase activity; GO:0019899 enzyme binding; GO:0030674 protein-macromolecule adaptor activity; GO:0031011 Ino80 complex; GO:0031491 nucleosome binding; GO:0031625 ubiquitin protein ligase binding; GO:0032452 histone demethylase activity; GO:0032454 histone H3K9 demethylase activity; GO:0036408 histone H3K14 acetyltransferase activity; GO:0040029 epigenetic regulation of gene expression; GO:0042054 histone methyltransferase activity; GO:0042393 histone binding; GO:0042800 histone H3K4 methyltransferase activity; GO:0043995 histone H4K5 acetyltransferase activity; GO:0043996 histone H4K8 acetyltransferase activity; GO:0043997 histone H4K12 acetyltransferase activity; GO:0046976 histone H3K27 methyltransferase activity; GO:0048188 Set1C/COMPASS complex; GO:0050681 nuclear androgen receptor binding; GO:0051864 histone H3K36 demethylase activity; GO:0061630 ubiquitin protein ligase activity; GO:0140003 histone H3K36me3 reader activity; GO:0140005 histone H4K20me2 reader activity; GO:0140681 histone H3K36me2/H3K36me3 demethylase activity; GO:0140684 histone H3K9me2/H3K9me3 demethylase activity; GO:0140945 histone H3K4 monomethyltransferase activity; GO:0140946 histone H3K4 dimethyltransferase activity; GO:0140953 histone H3K27 monomethyltransferase activity; GO:0140999 histone H3K4 trimethyltransferase activity
- KEGG
- EC: ec:1.14.11.66, ec:1.14.11.69, ec:2.1.1.354, ec:2.1.1.369, ec:2.1.1.37, ec:2.3.2.27 | KO: K02606, K06709, K09187, K09188, K10875, K11347, K11348, K11349, K11350, K11380, K11422, K11654, K14437, K17398, K22155, K22156, K23588, K24406 | Pathway: 00270, 00310, 01100, 03082, 03440, 04111, 04113, 04148, 04934 | Module: M00035 | BRITE: 00001, 01000, 03000, 03021, 03032, 03036, 03400, 04121
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPa02g2502.1
part_ofgenePa02g2502
