West Indian T2T · gene

Pa02g2612

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

50,576
bp
Pa02:68,686,448–68,737,023
genomic location
Record overview

Feature identity

Identifier
Pa02g2612
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
50,576 bp
Genomic location
Pa02:68,686,448–68,737,023
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC123168397 | Seed ortholog: 42345.A0A3Q0I3J2 | COG: S | eggNOG OG: Bin3@131567|A-1*, Bin3@2759|C-2
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000723 telomere maintenance; GO:0001510 RNA methylation; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005737 cytoplasm; GO:0008168 methyltransferase activity; GO:0008173 RNA methyltransferase activity; GO:0008757 S-adenosylmethionine-dependent methyltransferase activity; GO:0016073 snRNA metabolic process; GO:0016180 snRNA processing; GO:0017069 snRNA binding; GO:0017070 U6 snRNA binding; GO:0017148 negative regulation of translation; GO:0030515 snoRNA binding; GO:0032259 methylation; GO:0032502 developmental process; GO:0034244 negative regulation of transcription elongation by RNA polymerase II; GO:0040031 snRNA modification; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0097322 7SK snRNA binding; GO:0106349 snRNA methylation; GO:1900087 positive regulation of G1/S transition of mitotic cell cycle; GO:1904871 positive regulation of protein localization to Cajal body; GO:1905382 positive regulation of snRNA transcription by RNA polymerase II; GO:1990276 RNA 5'-gamma-phosphate methyltransferase activity
KEGG
KO: K15190 | BRITE: 00001, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.