West Indian T2T · gene

Pa02g3153

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

5,394
bp
Pa02:78,696,805–78,702,198
genomic location
Record overview

Feature identity

Identifier
Pa02g3153
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
5,394 bp
Genomic location
Pa02:78,696,805–78,702,198
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104604910 | Seed ortholog: 337451.A0A3S3MCH4 | COG: S | eggNOG OG: Ank_2@131567|BN-7, Ank_2@2759|hc-12, Ank_4@131567|GW-15, Ank_4@1437183|IFX-31, PGG@131567|A-1*, PGG@3193|DB-9, PGG@33090|a-5, PGG@3398|kI-19
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0001659 temperature homeostasis; GO:0001660 fever generation; GO:0001774 microglial cell activation; GO:0001964 startle response; GO:0002024 diet induced thermogenesis; GO:0002790 peptide secretion; GO:0003085 negative regulation of systemic arterial blood pressure; GO:0003674 molecular_function; GO:0006629 lipid metabolic process; GO:0006812 monoatomic cation transport; GO:0006816 calcium ion transport; GO:0006874 intracellular calcium ion homeostasis; GO:0006972 hyperosmotic response; GO:0007166 cell surface receptor signaling pathway; GO:0007204 positive regulation of cytosolic calcium ion concentration; GO:0007600 sensory perception; GO:0007605 sensory perception of sound; GO:0007608 sensory perception of smell; GO:0007628 adult walking behavior; GO:0007635 chemosensory behavior; GO:0007638 mechanosensory behavior; GO:0008150 biological_process; GO:0008285 negative regulation of cell population proliferation; GO:0008355 olfactory learning; GO:0009266 response to temperature stimulus; GO:0009268 response to pH; GO:0009270 response to humidity; GO:0009408 response to heat; GO:0009416 response to light stimulus; GO:0009507 chloroplast; GO:0009612 response to mechanical stimulus; GO:0009615 response to virus; GO:0009617 response to bacterium; GO:0009751 response to salicylic acid; GO:0010286 heat acclimation; GO:0010447 response to acidic pH; GO:0010459 negative regulation of heart rate; GO:0010917 negative regulation of mitochondrial membrane potential; GO:0010996 response to auditory stimulus; GO:0014047 glutamate secretion; GO:0014832 urinary bladder smooth muscle contraction; GO:0016567 protein ubiquitination; GO:0017158 regulation of calcium ion-dependent exocytosis; GO:0019233 sensory perception of pain; GO:0022401 negative adaptation of signaling pathway; GO:0030317 flagellated sperm motility; GO:0034220 monoatomic ion transmembrane transport; GO:0034605 cellular response to heat; GO:0035809 regulation of urine volume; GO:0035810 positive regulation of urine volume; GO:0035815 positive regulation of renal sodium excretion; GO:0035898 parathyroid hormone secretion; GO:0040040 thermosensory behavior; GO:0042048 olfactory behavior; GO:0042539 hypotonic salinity response; GO:0042636 negative regulation of hair cycle; GO:0042742 defense response to bacterium; GO:0043052 thermotaxis; GO:0043065 positive regulation of apoptotic process; GO:0043434 response to peptide hormone; GO:0045429 positive regulation of nitric oxide biosynthetic process; GO:0045773 positive regulation of axon extension; GO:0045893 positive regulation of DNA-templated transcription; GO:0045907 positive regulation of vasoconstriction; GO:0048060 negative gravitaxis; GO:0048148 behavioral response to cocaine; GO:0048265 response to pain; GO:0048266 behavioral response to pain; GO:0048681 negative regulation of axon regeneration; GO:0050826 response to freezing; GO:0050884 neuromuscular process controlling posture; GO:0050909 sensory perception of taste; GO:0050910 detection of mechanical stimulus involved in sensory perception of sound; GO:0050954 sensory perception of mechanical stimulus; GO:0050955 thermoception; GO:0050960 detection of temperature stimulus involved in thermoception; GO:0050965 detection of temperature stimulus involved in sensory perception of pain; GO:0050968 detection of chemical stimulus involved in sensory perception of pain; GO:0050974 detection of mechanical stimulus involved in sensory perception; GO:0050976 detection of mechanical stimulus involved in sensory perception of touch; GO:0051289 protein homotetramerization; GO:0051592 response to calcium ion; GO:0055074 calcium ion homeostasis; GO:0060083 smooth muscle contraction involved in micturition; GO:0060402 calcium ion transport into cytosol; GO:0070317 negative regulation of G0 to G1 transition; GO:0070509 calcium ion import; GO:0070588 calcium ion transmembrane transport; GO:0071312 cellular response to alkaloid; GO:0071318 cellular response to ATP; GO:0071345 cellular response to cytokine stimulus; GO:0071356 cellular response to tumor necrosis factor; GO:0071363 cellular response to growth factor stimulus; GO:0071446 cellular response to salicylic acid stimulus; GO:0071468 cellular response to acidic pH; GO:0071502 cellular response to temperature stimulus; GO:0090212 negative regulation of establishment of blood-brain barrier; GO:0090280 positive regulation of calcium ion import; GO:0098703 calcium ion import across plasma membrane; GO:0120162 positive regulation of cold-induced thermogenesis; GO:1900150 regulation of defense response to fungus; GO:1900426 positive regulation of defense response to bacterium; GO:1901594 response to capsazepine; GO:1902290 positive regulation of defense response to oomycetes; GO:1904058 positive regulation of sensory perception of pain; GO:1904181 positive regulation of membrane depolarization; GO:1904213 negative regulation of iodide transmembrane transport; GO:1905790 regulation of mechanosensory behavior; GO:1990090 cellular response to nerve growth factor stimulus; GO:2000031 regulation of salicylic acid mediated signaling pathway; GO:2000463 positive regulation of excitatory postsynaptic potential; GO:2000727 positive regulation of cardiac muscle cell differentiation
KEGG
KO: K15503 | Pathway: 04080, 04218, 04621, 04750, 04928, 04961, 04970, 04978, 05418 | BRITE: 00001, 01009, 03400
Biological context

Connected feature records

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