West Indian T2T · gene

Pa02g3191

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

4,468
bp
Pa02:79,304,582–79,309,049
genomic location
Record overview

Feature identity

Identifier
Pa02g3191
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
4,468 bp
Genomic location
Pa02:79,304,582–79,309,049
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: GRF6 | Seed ortholog: 337451.A0A3S3M660 | COG: S | eggNOG OG: QLQ@2759|A-1, QLQ@3193|K-4, QLQ@3398|DM-11, WRC@131221|EO-13, WRC@131567|A-1*, WRC@33090|e-6, WRC@3398|No-19
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000182 rDNA binding; GO:0000776 kinetochore; GO:0000785 chromatin; GO:0000791 euchromatin; GO:0000902 cell morphogenesis; GO:0000976 transcription cis-regulatory region binding; GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding; GO:0001221 transcription coregulator binding; GO:0001223 transcription coactivator binding; GO:0001568 blood vessel development; GO:0001570 vasculogenesis; GO:0001650 fibrillar center; GO:0001701 in utero embryonic development; GO:0001832 blastocyst growth; GO:0001835 blastocyst hatching; GO:0001889 liver development; GO:0001947 heart looping; GO:0002039 p53 binding; GO:0003151 outflow tract morphogenesis; GO:0003281 ventricular septum development; GO:0003406 retinal pigment epithelium development; GO:0003407 neural retina development; GO:0003682 chromatin binding; GO:0003690 double-stranded DNA binding; GO:0003713 transcription coactivator activity; GO:0003714 transcription corepressor activity; GO:0004386 helicase activity; GO:0005515 protein binding; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005700 polytene chromosome; GO:0005726 perichromatin fibrils; GO:0005730 nucleolus; GO:0006261 DNA-templated DNA replication; GO:0006302 double-strand break repair; GO:0006334 nucleosome assembly; GO:0006337 nucleosome disassembly; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0007286 spermatid development; GO:0007399 nervous system development; GO:0007403 glial cell fate determination; GO:0007406 negative regulation of neuroblast proliferation; GO:0007409 axonogenesis; GO:0007417 central nervous system development; GO:0007419 ventral cord development; GO:0007474 imaginal disc-derived wing vein specification; GO:0007507 heart development; GO:0008094 ATP-dependent activity, acting on DNA; GO:0008284 positive regulation of cell population proliferation; GO:0008285 negative regulation of cell population proliferation; GO:0008406 gonad development; GO:0008586 imaginal disc-derived wing vein morphogenesis; GO:0008587 imaginal disc-derived wing margin morphogenesis; GO:0010467 gene expression; GO:0010629 negative regulation of gene expression; GO:0010842 retina layer formation; GO:0014003 oligodendrocyte development; GO:0014032 neural crest cell development; GO:0014033 neural crest cell differentiation; GO:0016020 membrane; GO:0016363 nuclear matrix; GO:0016514 SWI/SNF complex; GO:0016586 RSC-type complex; GO:0016887 ATP hydrolysis activity; GO:0019827 stem cell population maintenance; GO:0021634 optic nerve formation; GO:0022008 neurogenesis; GO:0030071 regulation of mitotic metaphase/anaphase transition; GO:0030177 positive regulation of Wnt signaling pathway; GO:0030182 neuron differentiation; GO:0030198 extracellular matrix organization; GO:0030216 keratinocyte differentiation; GO:0030308 negative regulation of cell growth; GO:0030334 regulation of cell migration; GO:0030900 forebrain development; GO:0030902 hindbrain development; GO:0030957 Tat protein binding; GO:0031101 fin regeneration; GO:0031490 chromatin DNA binding; GO:0031492 nucleosomal DNA binding; GO:0031496 positive regulation of mating type switching; GO:0031643 positive regulation of myelination; GO:0032991 protein-containing complex; GO:0034198 cellular response to amino acid starvation; GO:0034241 positive regulation of macrophage fusion; GO:0035060 brahma complex; GO:0035116 embryonic hindlimb morphogenesis; GO:0035172 hemocyte proliferation; GO:0035887 aortic smooth muscle cell differentiation; GO:0035904 aorta development; GO:0035973 aggrephagy; GO:0036335 intestinal stem cell homeostasis; GO:0042148 DNA strand invasion; GO:0042802 identical protein binding; GO:0043066 negative regulation of apoptotic process; GO:0043410 positive regulation of MAPK cascade; GO:0043524 negative regulation of neuron apoptotic process; GO:0043697 cell dedifferentiation; GO:0043923 host-mediated activation of viral transcription; GO:0044877 protein-containing complex binding; GO:0045088 regulation of innate immune response; GO:0045582 positive regulation of T cell differentiation; GO:0045596 negative regulation of cell differentiation; GO:0045597 positive regulation of cell differentiation; GO:0045663 positive regulation of myoblast differentiation; GO:0045793 positive regulation of cell size; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048562 embryonic organ morphogenesis; GO:0048596 embryonic camera-type eye morphogenesis; GO:0048703 embryonic viscerocranium morphogenesis; GO:0048730 epidermis morphogenesis; GO:0048813 dendrite morphogenesis; GO:0050681 nuclear androgen receptor binding; GO:0060038 cardiac muscle cell proliferation; GO:0060059 embryonic retina morphogenesis in camera-type eye; GO:0060318 definitive erythrocyte differentiation; GO:0060324 face development; GO:0060347 heart trabecula formation; GO:0060766 negative regulation of androgen receptor signaling pathway; GO:0060973 cell migration involved in heart development; GO:0060976 coronary vasculature development; GO:0061626 pharyngeal arch artery morphogenesis; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0070182 DNA polymerase binding; GO:0070307 lens fiber cell development; GO:0070316 regulation of G0 to G1 transition; GO:0070983 dendrite guidance; GO:0071333 cellular response to glucose stimulus; GO:0071564 npBAF complex; GO:0071565 nBAF complex; GO:0072686 mitotic spindle; GO:0106222 lncRNA binding; GO:0120162 positive regulation of cold-induced thermogenesis; GO:0120262 negative regulation of heterochromatin organization; GO:0140008 histone H4 reader activity; GO:0140015 histone H3K14ac reader activity; GO:0140092 bBAF complex; GO:0140288 GBAF complex; GO:0140297 DNA-binding transcription factor binding; GO:0140566 histone reader activity; GO:0140658 ATP-dependent chromatin remodeler activity; GO:1900189 positive regulation of cell adhesion involved in single-species biofilm formation; GO:1900231 regulation of single-species biofilm formation on inanimate substrate; GO:1901798 positive regulation of signal transduction by p53 class mediator; GO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I; GO:1902459 positive regulation of stem cell population maintenance; GO:1902661 positive regulation of glucose mediated signaling pathway; GO:1902692 regulation of neuroblast proliferation; GO:1902895 positive regulation of miRNA transcription; GO:1903427 negative regulation of reactive oxygen species biosynthetic process; GO:1904888 cranial skeletal system development; GO:2000045 regulation of G1/S transition of mitotic cell cycle; GO:2000134 negative regulation of G1/S transition of mitotic cell cycle; GO:2000219 positive regulation of invasive growth in response to glucose limitation; GO:2000648 positive regulation of stem cell proliferation; GO:2000781 positive regulation of double-strand break repair; GO:2000819 regulation of nucleotide-excision repair
KEGG
KO: K11647, K11786 | Pathway: 03082, 04714, 05225 | BRITE: 00001, 03021, 03036
Biological context

Connected feature records

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