West Indian T2T · gene

Pa02g3261

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,344
bp
Pa02:80,717,142–80,719,485
genomic location
Record overview

Feature identity

Identifier
Pa02g3261
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
2,344 bp
Genomic location
Pa02:80,717,142–80,719,485
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104604218 | Seed ortholog: 337451.A0A3S3PW75 | COG: S | eggNOG OG: PARP@131567|Aw-8, PARP@2759|Px-15, PARP@3193|BFY-29, RST@131567|A-1*, RST@3193|c-6
Gene Ontology
GO:0000077 DNA damage checkpoint signaling; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0002230 positive regulation of defense response to virus by host; GO:0003674 molecular_function; GO:0003714 transcription corepressor activity; GO:0003950 NAD+ poly-ADP-ribosyltransferase activity; GO:0004857 enzyme inhibitor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005794 Golgi apparatus; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006302 double-strand break repair; GO:0006325 chromatin organization; GO:0008150 biological_process; GO:0010421 hydrogen peroxide-mediated programmed cell death; GO:0010608 post-transcriptional regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0010918 positive regulation of mitochondrial membrane potential; GO:0016020 membrane; GO:0019677 NAD+ catabolic process; GO:0019899 enzyme binding; GO:0019985 translesion synthesis; GO:0032991 protein-containing complex; GO:0042393 histone binding; GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein; GO:0042532 negative regulation of tyrosine phosphorylation of STAT protein; GO:0043086 negative regulation of catalytic activity; GO:0043124 negative regulation of canonical NF-kappaB signal transduction; GO:0044389 ubiquitin-like protein ligase binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0048147 negative regulation of fibroblast proliferation; GO:0060330 regulation of response to type II interferon; GO:0060335 positive regulation of type II interferon-mediated signaling pathway; GO:0060336 negative regulation of type II interferon-mediated signaling pathway; GO:0070212 protein poly-ADP-ribosylation; GO:0070213 protein auto-ADP-ribosylation; GO:0070403 NAD+ binding; GO:0070530 K63-linked polyubiquitin modification-dependent protein binding; GO:0072570 ADP-D-ribose binding; GO:0090734 site of DNA damage; GO:0097677 STAT family protein binding; GO:0140297 DNA-binding transcription factor binding; GO:0140802 NAD+-protein-C-terminal glycine ADP-ribosyltransferase activity; GO:0140804 NAD+-protein-lysine ADP-ribosyltransferase activity; GO:0140806 NAD+-protein-aspartate ADP-ribosyltransferase activity; GO:0140807 NAD+-protein-glutamate ADP-ribosyltransferase activity; GO:1900045 negative regulation of protein K63-linked ubiquitination; GO:1900182 positive regulation of protein localization to nucleus; GO:1902216 positive regulation of interleukin-4-mediated signaling pathway; GO:1990404 NAD+-protein mono-ADP-ribosyltransferase activity
KEGG
EC: ec:2.4.2.30 | KO: K15259, K15260, K15261 | BRITE: 00001, 01000
Biological context

Connected feature records

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