West Indian T2T · gene

Pa03g1800

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

44,633
bp
Pa03:49,401,180–49,445,812
genomic location
Record overview

Feature identity

Identifier
Pa03g1800
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
44,633 bp
Genomic location
Pa03:49,401,180–49,445,812
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC108983431, PCMP-H53 | Seed ortholog: 337451.A0A3S3MWR4, 337451.A0A443NCS0 | COG: S | eggNOG OG: E_motif@131567|A-1*, E_motif@1437183|Vx-12, E_motif@2759|Eq-9, E_motif@58023|Ny-11, Myb_DNA-bind_7@2759|A-1, PPR@131567|Fd-11, PPR@1437183|Sim-38, PPR@58023|Qrl-36, PPR_2@131221|Hjh-32, PPR_2@131567|DQ-11, PPR_2@1437183|OJc-38, PPR_2@3193|Ina-33, PPR_2@3398|NEp-37, PPR_2@58023|MAQ-36
Gene Ontology
GO:0000963 mitochondrial RNA processing; GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding; GO:0001112 DNA-templated transcription open complex formation; GO:0001156 TFIIIC-class transcription factor complex binding; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0004126 cytidine deaminase activity; GO:0004519 endonuclease activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0006383 transcription by RNA polymerase III; GO:0006384 transcription initiation at RNA polymerase III promoter; GO:0006979 response to oxidative stress; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008380 RNA splicing; GO:0009266 response to temperature stimulus; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009416 response to light stimulus; GO:0009451 RNA modification; GO:0009507 chloroplast; GO:0009644 response to high light intensity; GO:0009651 response to salt stress; GO:0009658 chloroplast organization; GO:0009733 response to auxin; GO:0009735 response to cytokinin; GO:0009737 response to abscisic acid; GO:0009739 response to gibberellin; GO:0009749 response to glucose; GO:0009793 embryo development ending in seed dormancy; GO:0010027 thylakoid membrane organization; GO:0010087 phloem or xylem histogenesis; GO:0010102 lateral root morphogenesis; GO:0010182 sugar mediated signaling pathway; GO:0010207 photosystem II assembly; GO:0010305 leaf vascular tissue pattern formation; GO:0010380 regulation of chlorophyll biosynthetic process; GO:0010449 root meristem growth; GO:0010588 cotyledon vascular tissue pattern formation; GO:0016125 sterol metabolic process; GO:0016554 cytidine to uridine editing; GO:0016556 mRNA modification; GO:0017004 cytochrome complex assembly; GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway; GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol phosphate pathway; GO:0031425 chloroplast RNA processing; GO:0031426 polycistronic mRNA processing; GO:0031930 mitochondria-nucleus signaling pathway; GO:0034046 poly(G) binding; GO:0042793 plastid transcription; GO:0045945 positive regulation of transcription by RNA polymerase III; GO:0048364 root development; GO:0048366 leaf development; GO:0048564 photosystem I assembly; GO:0050832 defense response to fungus; GO:0060090 molecular adaptor activity; GO:0070129 regulation of mitochondrial translation; GO:0070898 RNA polymerase III preinitiation complex assembly; GO:0080156 mitochondrial mRNA modification; GO:0140053 mitochondrial gene expression; GO:1900864 mitochondrial RNA modification; GO:1900865 chloroplast RNA modification; GO:1905639 positive regulation of mitochondrial mRNA catabolic process
KEGG
EC: ec:2.7.7.6, ec:3.2.1.14, ec:3.5.1.49, ec:5.2.1.8, ec:5.6.2.4 | KO: K01183, K01455, K03457, K10683, K10908, K15198, K15271 | Pathway: 00460, 00520, 00630, 00910, 01100, 01200, 03440 | BRITE: 00001, 01000, 03019, 03021, 03029, 03036, 03400, 04121 | CAZy: GT77|Glycosyltransferase Family 77.
Biological context

Connected feature records

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