West Indian T2T · gene

Pa05g0404

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

13,734
bp
Pa05:6,795,410–6,809,143
genomic location
Record overview

Feature identity

Identifier
Pa05g0404
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
13,734 bp
Genomic location
Pa05:6,795,410–6,809,143
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC123049086 | Seed ortholog: 337451.A0A3S4Q1H6 | COG: S | eggNOG OG: DUF608@131567|A-1, DUF608@3193|Gx-12, Glyco_hydr_116N@131567|A-1, Glyco_hydr_116N@3193|Gq-14
Gene Ontology
GO:0000139 Golgi membrane; GO:0004348 glucosylceramidase activity; GO:0005789 endoplasmic reticulum membrane; GO:0005790 smooth endoplasmic reticulum; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006678 glucosylceramide metabolic process; GO:0006680 glucosylceramide catabolic process; GO:0007409 axonogenesis; GO:0007417 central nervous system development; GO:0008203 cholesterol metabolic process; GO:0008206 bile acid metabolic process; GO:0008422 beta-glucosidase activity; GO:0009247 glycolipid biosynthetic process; GO:0016020 membrane; GO:0016139 glycoside catabolic process; GO:0021954 central nervous system neuron development; GO:0030833 regulation of actin filament polymerization; GO:0031113 regulation of microtubule polymerization; GO:0046479 glycosphingolipid catabolic process; GO:0046527 glucosyltransferase activity; GO:0050295 steryl-beta-glucosidase activity; GO:0097035 regulation of membrane lipid distribution
KEGG
EC: ec:3.2.1.45 | KO: K17108 | Pathway: 00511, 00600, 01100 | BRITE: 00001, 01000 | CAZy: GH116|Glycoside Hydrolase Family 116.
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.