Feature identity
- Identifier
- PaHa05g30340.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,116 bp
- Genomic location
- 5:76,740,378–76,744,505
- Strand
- +
Hass · mRNA
PaHa05g30340.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,116
- bp
- 5:76,740,378–76,744,505
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g30340
- eggNOG
- Preferred name: TEM1 | Seed ortholog: 337451.A0A3S3MYQ9 | COG: S | eggNOG OG: AP2@131567|Bx-9, AP2@1437183|AYA-23, AP2@58023|Hx-14, B3@131567|A-1*, B3@33090|zE-19, B3@35493|BDo-24
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009741 response to brassinosteroid; GO:0009910 negative regulation of flower development; GO:0045892 negative regulation of DNA-templated transcription; GO:0048366 leaf development; GO:0048527 lateral root development; GO:0048573 photoperiodism, flowering; GO:0071456 cellular response to hypoxia
- KEGG
- KO: K09287 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g30340.1-protein
derives_frommRNAPaHa05g30340.1
mRNAPaHa05g30340.1
part_ofgenePaHa05g30340
CDS
part_ofPaHa05g30340.1-CDS-5-1787993825:76740378..76741383mRNAPaHa05g30340.1
CDS
part_ofPaHa05g30340.1-CDS-5-1787993825:76742727..76742831mRNAPaHa05g30340.1
CDS
part_ofPaHa05g30340.1-CDS-5-1787993825:76744501..76744505mRNAPaHa05g30340.1
exon
part_ofPaHa05g30340.1-exon-5-1787993825:76740378..76741383mRNAPaHa05g30340.1
exon
part_ofPaHa05g30340.1-exon-5-1787993825:76742727..76742831mRNAPaHa05g30340.1
exon
part_ofPaHa05g30340.1-exon-5-1787993825:76744501..76744505mRNAPaHa05g30340.1
