West Indian T2T · gene

Pa06g1439

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

13,598
bp
Pa06:21,527,596–21,541,193
genomic location
Record overview

Feature identity

Identifier
Pa06g1439
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
13,598 bp
Genomic location
Pa06:21,527,596–21,541,193
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104597375 | Seed ortholog: 337451.A0A443NWD6 | COG: S | eggNOG OG: Methyltransf_11@131567|AjK-27, Methyltransf_11@1437183|zKE-65, Methyltransf_11@2759|MEt-38, Methyltransf_11@3398|uQH-58, Sterol_MT_C@131567|A-1, Sterol_MT_C@3398|HP-15
Gene Ontology
GO:0003838 sterol 24-C-methyltransferase activity; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005741 mitochondrial outer membrane; GO:0005783 endoplasmic reticulum; GO:0005794 Golgi apparatus; GO:0005811 lipid droplet; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006696 ergosterol biosynthetic process; GO:0006972 hyperosmotic response; GO:0007389 pattern specification process; GO:0008757 S-adenosylmethionine-dependent methyltransferase activity; GO:0009617 response to bacterium; GO:0009825 multidimensional cell growth; GO:0010051 xylem and phloem pattern formation; GO:0016126 sterol biosynthetic process; GO:0032876 negative regulation of DNA endoreduplication; GO:0036196 zymosterol metabolic process; GO:0042802 identical protein binding; GO:0044858 plasma membrane raft polarization; GO:0045335 phagocytic vesicle; GO:0071466 cellular response to xenobiotic stimulus; GO:0090378 seed trichome elongation
KEGG
EC: ec:2.1.1.41 | KO: K00559 | Pathway: 00100, 01100, 01110 | Module: M00102, M00917 | BRITE: 00001, 01000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.